View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20978_high_13 (Length: 248)
Name: NF20978_high_13
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20978_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38198443 - 38198674
Alignment:
| Q |
1 |
ggacactgaattcatcatttttgcaagtgatggtctatggaaggtacgaggatacttcgtttatgctagaattatcaactt-cagtaattatcaacttaa |
99 |
Q |
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| T |
38198443 |
ggacactgaattcatcatttttgcaagtgatggtctatggaaggtacgaggatactttgtttatgctagaattatcaactttctgtaattatcaacttaa |
38198542 |
T |
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| Q |
100 |
aacttaggttcactattgcaggtgatgacgaatcaagaggcttgtgaatgtatcaaggatgttgatgatgctcaaaaagcagctacaaagttagtcaaag |
199 |
Q |
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| T |
38198543 |
aacttaggttcactattgcaggtgatgacgaatcaagaggcttgtgactgtatcaaggatgttgatgatgctcaaaaagcagctacaaagttagtcaaag |
38198642 |
T |
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| Q |
200 |
aagccaaatctcttggaagctgtgacgatatt |
231 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38198643 |
aagccaaatctcttggaagctgtgacgatatt |
38198674 |
T |
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