View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20978_high_16 (Length: 237)
Name: NF20978_high_16
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20978_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 43505713 - 43505492
Alignment:
| Q |
16 |
ataccgtgctcgcattgtagtgtttattgtttaggttgaatgaatgacttgattttctcttggtggttctctccttttaagtcagaggtttccttctagt |
115 |
Q |
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| T |
43505713 |
atacagtgctcgcattgtagtgtttattgtttaggttgaatgaatgacttgattttctcttggtggttctctccttttaagtcacaggtttccttctagt |
43505614 |
T |
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| Q |
116 |
ccggtggatatcttgcgccatattttaaggatatttggctagggattctttaacacaaccatgtactcgctattttactcagaccctattcggattggtc |
215 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43505613 |
ccggtggatatctcgcgccatattttaaggatatttggctagggattctttaacacaaccatgtagtcgctattttactcagaccctattcggattggtc |
43505514 |
T |
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| Q |
216 |
agtcccggatcatgtcgagtac |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
43505513 |
agtcccggatcatgtcgagtac |
43505492 |
T |
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