View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20978_high_2 (Length: 835)
Name: NF20978_high_2
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20978_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 740; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 17 - 820
Target Start/End: Original strand, 21596822 - 21597625
Alignment:
| Q |
17 |
aatataagaaccaacaacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgca |
116 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
21596822 |
aatacaagaaccaacaacaacaaacaaacacgaaagaaccttccataaatcgctcttatcagttgattccctcgcataatatctcctcacaagcaaagca |
21596921 |
T |
|
| Q |
117 |
atagccataagcataaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttg |
216 |
Q |
| |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21596922 |
atcgccataagcataaaaatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttg |
21597021 |
T |
|
| Q |
217 |
tcaaaagtgtagcattaataggtgttccagttttaggatgaataagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtatacctagc |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
21597022 |
tcaaaagtgtagcattaataggtgttccagtttttggatgaataagtgcaaaaaagggtggaatcatttgtgaccttgcaatttgagtagtgtacctagc |
21597121 |
T |
|
| Q |
317 |
ttgtcccattgacccaacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcataccaatttgaacaaaagca |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21597122 |
ttgtcccattgacccaacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcataccaatttgaacaaaagca |
21597221 |
T |
|
| Q |
417 |
accgaataagcagctccaacatcaatctcactatacttaaccatattcacaagtgccaatgccattaaacaataaataaccgtgatcatagacattgaac |
516 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21597222 |
actgaataagcagctccagcatcaatctcactatacttaaccatattcacaagtgccaatgccatcaaacaataaataaccgtgatcatagacattgaac |
21597321 |
T |
|
| Q |
517 |
caattaaaccaataggtatatctcttgaagggtttttagtttcttcagccatagttgcaaccatatcaaaaccggtataagaccaatacacaacagctgc |
616 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
21597322 |
caattaaaccaataggtatatctctagaagggtttttagtttcttcagccatagttgcaaccatatcgaaaccggtataagaccaatacacaacagctgc |
21597421 |
T |
|
| Q |
617 |
agcgttaaaaacacctttaacaccgtaaggaaaaaacggtgttaaatttgacgacttcccgtgtataaaaccgatcacaataataaaaccgatgataaaa |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21597422 |
ggcgttaaaaacacctttaacaccgtaaggaaaaaacggtgttaaatttgaagacttcccgtgtataaaaccgatcacaataataaaaccgatgataaaa |
21597521 |
T |
|
| Q |
717 |
attgtaacaattgaacttaaccatgttaagatagatgtttttcgtgttccactagccgcgattccgttagtaattaacaaaaccacaacggctaatggat |
816 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21597522 |
attgtaacaattgaacttaaccatgttaagatagatgtttttcgtgttccactagccgcgattccgttagtaattaacaaaaccacaacggctaatggat |
21597621 |
T |
|
| Q |
817 |
caag |
820 |
Q |
| |
|
|||| |
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|
| T |
21597622 |
caag |
21597625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 24 - 401
Target Start/End: Original strand, 11986993 - 11987370
Alignment:
| Q |
24 |
gaaccaacaacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgcaatagcca |
123 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11986993 |
gaaccaacaacaacaaacaaacacaaaagaaccttccataaatcactcttatccgttgcttccctcgcataatatctcctcacaagcaacgcaatagcca |
11987092 |
T |
|
| Q |
124 |
taagcataaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaag |
223 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11987093 |
taagcataaaaatgaaaagagtacttacagaaaaaacactagccagaacatccacactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaag |
11987192 |
T |
|
| Q |
224 |
tgtagcattaataggtgttccagttttaggatgaataagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtatacctagcttgtccc |
323 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11987193 |
tgtagcattaataggtgttccagttttgggatgaacaagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtgtacctagcttgtccc |
11987292 |
T |
|
| Q |
324 |
attgacccaacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcatacca |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11987293 |
attgacccaacaagcaaacttgttgtcattcctttcaaagaacaaatactcactaaatatttaccccatttcatacca |
11987370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 576
Target Start/End: Original strand, 15115555 - 15115655
Alignment:
| Q |
476 |
tgccattaaacaataaataaccgtgatcatagacattgaaccaattaaaccaataggtatatctcttgaagggtttttagtttcttcagccatagttgca |
575 |
Q |
| |
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|||||| || ||||| ||||| ||||||| ||||||||||||||| || || || ||||| || ||| || |||||||||||||||||||| |||||| |
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| T |
15115555 |
tgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggtatgtcctttggcggatttttagtttcttcagccatggttgca |
15115654 |
T |
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| Q |
576 |
a |
576 |
Q |
| |
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| |
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| T |
15115655 |
a |
15115655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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