View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20978_high_5 (Length: 409)
Name: NF20978_high_5
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20978_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 401
Target Start/End: Complemental strand, 9219636 - 9219257
Alignment:
| Q |
21 |
atggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagcccacatata |
120 |
Q |
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| T |
9219636 |
atggacaatctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagaataacccacatata |
9219537 |
T |
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| Q |
121 |
ttgtcacaagttttagttaggattgaatcagttgcaaatactcgagtttgataaccgactctagaacaatatttagttacatttacctaagtttaagtcg |
220 |
Q |
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| T |
9219536 |
ttttcacaatttctagttaagattgaatcagt-gcgaatactcgagtttgataactgactctagaacaatttttagttacatttatctaactttaagttg |
9219438 |
T |
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| Q |
221 |
aactcaagattactaaaagggccgaagggttaagaccaggnnnnnnntatgattaaagtattcagcatgcatgttagctattgatattaatttataaaac |
320 |
Q |
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| T |
9219437 |
aactccagactactaaaagggtcgaagggttaagaccaggaaaaaaatatgattaaggtattcagcatgcatgttagctattgatattaatttataaaac |
9219338 |
T |
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| Q |
321 |
aattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc |
401 |
Q |
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| T |
9219337 |
aattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc |
9219257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 9162673 - 9162578
Alignment:
| Q |
19 |
tgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagccca |
114 |
Q |
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| T |
9162673 |
tgatggacaatctggaaatggaacacttgaaggaggttgtcatagacgagatattgttatcaaggttgccattggtatgtcactaaacatagccca |
9162578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 9156862 - 9156784
Alignment:
| Q |
19 |
tgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
97 |
Q |
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| T |
9156862 |
tgatggacactctggaaatggaacattggaaggagggtgtcatagacgagaggtcatcaccaaggttgccattggtaag |
9156784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 9171470 - 9171392
Alignment:
| Q |
19 |
tgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
97 |
Q |
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| T |
9171470 |
tgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9171392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 9179452 - 9179374
Alignment:
| Q |
19 |
tgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
97 |
Q |
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| T |
9179452 |
tgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9179374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 9201160 - 9201067
Alignment:
| Q |
19 |
tgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagcc |
112 |
Q |
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| T |
9201160 |
tgatggacaatctggaaatggaacgttggcaggaggttgtcataaacaagatgttattaccaaggttgcaattggtaagaacctaagcatagcc |
9201067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 9162459 - 9162352
Alignment:
| Q |
290 |
catgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtgg |
389 |
Q |
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|||||||||||| ||||||| |||||| ||||||| || || | || ||| ||| || |||||||||| ||||||||||| | || | |||||||||| |
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| T |
9162459 |
catgttagctatcgatattattttatagaacaatttatgaattgacttcaatacatttcaaatgcaggagcaagtgctggaatcattattctatttgtgg |
9162360 |
T |
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| Q |
390 |
cggtttca |
397 |
Q |
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| T |
9162359 |
cgatttca |
9162352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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