View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20978_high_7 (Length: 303)

Name: NF20978_high_7
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20978_high_7
NF20978_high_7
[»] chr4 (1 HSPs)
chr4 (1-303)||(38197969-38198271)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 38197969 - 38198271
Alignment:
Q  1 atggtcttgcaaaacagcttactgtggatcacgaaccggaaaaggaaaaagatctggttgagagcagaggaggttgtgtttttaagagacctggtaatga 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38197969 atggtcttgcaaaacaacttactgtggatcacgaaccggaaaaggaaaaagatctggttgagagcagaggaggttgtgtttttaagagacctggtaatga 38198068  T
Q  101 tgaaataagttcaacaaaatttataaaagcataacttccttcatcatgtaataattttcttttttcatacatgaacataaacttgcttctgtatatcata 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38198069 tgaaataagttcaacaaaatttataaatgcataacttccttcatcatgtaataattttcttttttcatacatgaacataaacttacttctgtatatcata 38198168  T
Q  201 agaacttcaagtctatgcatgacacctannnnnnngctgaatagatagagttttctaataatataacaatcagaatgaaagattaaaagttttcaactta 300  Q
    |||| |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38198169 agaatttcaagtctatgcatgacacctatttttttgctgaatagatagagttttctaataatataacaatcagaatgaaagattaaaagttttcaactta 38198268  T
Q  301 aag 303  Q
    |||    
T  38198269 aag 38198271  T

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