View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20978_low_11 (Length: 285)
Name: NF20978_low_11
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20978_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 40526269 - 40526013
Alignment:
| Q |
12 |
atgagaataagaagtattggtaaacctcaatgaattaacacacatgcaaatgtttcgattgatcaagctgaacgccataaggaatcgtccattgttcagt |
111 |
Q |
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| T |
40526269 |
atgagaataagaagtattggtaaacctcaatgaattaacacacgtgcaaatgttacgattgatcaagctgaacgccataaggaatcgtccattgttcagt |
40526170 |
T |
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| Q |
112 |
tacaagtgtatttgaagaggtaattttacgcataaaccaaaagatgcgctttcgttgctggaaaagtgtgatccaacgacattgagtttcaggcacccag |
211 |
Q |
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| T |
40526169 |
tacaagtgtatttgaagaggtaattttacgcataaaccaaaagctgcgctttcgttgctggaaaagtgtgatccaactacattgagtttcaggcacccag |
40526070 |
T |
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| Q |
212 |
gaggaggatgaactcaactatgcttttgatgtgtattgtttagttctctggaggttt |
268 |
Q |
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| T |
40526069 |
gaggaggatgaactcaactatgcttttgatgtgtattgtttagttctctggaggttt |
40526013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 22113481 - 22113576
Alignment:
| Q |
165 |
gttgctggaaaagtgtgatccaacgacattgagtttcaggcacccaggaggaggatgaactcaactatgcttttgatgtgtattgtttagttctct |
260 |
Q |
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| T |
22113481 |
gttgctgaaaaagtgtgatccatcgacatttagtttcaggcacccatgaggaggatgaacccaactacgcttcagatgtgcattgtttatttctct |
22113576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 40525960 - 40525865
Alignment:
| Q |
165 |
gttgctggaaaagtgtgatccaacgacattgagtttcaggcacccaggaggaggatgaactcaactatgcttttgatgtgtattgtttagttctct |
260 |
Q |
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| T |
40525960 |
gttgctgaaaaagtgtgatccatcgacatttagtttcaggcacccatgaggaggatgaacccaactacgcttcagatgtgcattgtttatttctct |
40525865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 16883367 - 16883304
Alignment:
| Q |
188 |
cgacattgagtttcaggcacccaggaggaggatgaactcaactatgcttttgatgtgtattgtt |
251 |
Q |
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| T |
16883367 |
cgacattgagtttgaggcgcccaagaggaagatgaactcaactatgcttctgatgtgcattgtt |
16883304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 32739008 - 32739078
Alignment:
| Q |
167 |
tgctggaaaagtgtgatccaacgacattgagtttcaggcacccaggaggaggatgaactcaactatgcttt |
237 |
Q |
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| T |
32739008 |
tgctggtaaagtataatccatcgacattgagtttgaggcgtccaggtgaaggataaactcaactatgcttt |
32739078 |
T |
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