View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20978_low_3 (Length: 601)
Name: NF20978_low_3
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20978_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Complemental strand, 26825018 - 26824441
Alignment:
| Q |
18 |
agaagcttcaagtctcatctctagataagatagagcaaagtaagctaaagctaacaagcaggtcctagagctatcctcaggattagaagttgatgcttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26825018 |
agaagcttcaagtctcatctctagataagatagagcaaagcaagctaaagctaacaagcaggtcctagagctatcctcaggattagaagttgatggttta |
26824919 |
T |
|
| Q |
118 |
actcaagctgcactgagtctaaaggatcttgttcatgaagatcccaaggaagatgtatccagaaagcaaactgaggacagggagcaagttaggaagctgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26824918 |
actcaagctgcactgagtctaaaggatcttgttcatgaagatcccaaggaagatgtatccagaaagcaaactgaggacagggagcaagttaggaagctgc |
26824819 |
T |
|
| Q |
218 |
ctccagacttacaaggaaaagatgttgtagaaagctcaaagttagtggcatctctgatgaaggtcaataaggagtctgttgcttctaatgcaaggccata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26824818 |
ctccagacttacaaggaaaagatgttgtagaaagctcagagttagtggcatctctgatgaaggtcaataaggagtctgttgcttctaatgcaaggccata |
26824719 |
T |
|
| Q |
318 |
agctagaaacacaagtattgatgcacactcctcctatcccatagaccttagttcatcatcatcagactctgatgatgataaaatccttagccagagattc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26824718 |
agctagaaacacaagtattgatgcacactcctcctatcccatagaccttagttcatcatcatcagactctgatgatgataaaatccttagccagagattc |
26824619 |
T |
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| Q |
418 |
accgacctacataaagtcaaaacccccacaccatcaaccaaacctaaatctaagcttagacctattcctggccaaggtgatgtatctnnnnnnnccaaat |
517 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26824618 |
acaaacctacataaagtcaaaacccccacaccatcaaccaaacctaaatctaagcttagacctattcctggccaaggtgatgtatctaaaaaaaccaaat |
26824519 |
T |
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| Q |
518 |
tctttgatccaccaaaaagtttagggtggatggagtttcttgtgtaggtttaggagggttggatgatgatgatgatgt |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26824518 |
tctttgatccaccaaaaagtttagggtggatggagtttcttgtgtaggtttaggagggttggatgatgatgatgatgt |
26824441 |
T |
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