View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20978_low_4 (Length: 519)

Name: NF20978_low_4
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20978_low_4
NF20978_low_4
[»] chr3 (18 HSPs)
chr3 (296-500)||(8340524-8340728)
chr3 (308-498)||(8350424-8350616)
chr3 (309-443)||(8353531-8353666)
chr3 (1-90)||(8350118-8350207)
chr3 (1-139)||(8352862-8353004)
chr3 (1-83)||(8252964-8253046)
chr3 (1-90)||(8260704-8260793)
chr3 (1-80)||(8356429-8356508)
chr3 (1-80)||(8360602-8360681)
chr3 (1-78)||(8334137-8334214)
chr3 (1-86)||(8258597-8258682)
chr3 (247-303)||(8339984-8340040)
chr3 (162-210)||(8353006-8353054)
chr3 (1-86)||(8265670-8265755)
chr3 (102-139)||(8350237-8350274)
chr3 (260-312)||(8356620-8356672)
chr3 (260-312)||(8360837-8360889)
chr3 (392-443)||(8256216-8256267)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 296 - 500
Target Start/End: Original strand, 8340524 - 8340728
Alignment:
Q  296 ttagcgagcaaggagaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggacacttgttaattatg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  8340524 ttagcgagcaaggagaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggaaacttgttgattatg 8340623  T
Q  396 cattcgaaattacaatgttatttcttctgtctttttcagagcttatttcatgtaggtccttgcttggggaggaactagtcgtagtctaaatataatgact 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||    
T  8340624 cattcgaaattacaatgttatttcttctgtctttttcagagcttatttcatgtaggtccttgcttggggagaaactagtcgtcgtcgaaatagaatgact 8340723  T
Q  496 tgact 500  Q
    |||||    
T  8340724 tgact 8340728  T

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Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 308 - 498
Target Start/End: Original strand, 8350424 - 8350616
Alignment:
Q  308 gagaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggacacttgttaattatgcattcgaaatta 407  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  8350424 gagaaaatttttgggaccacatagaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggacacttgttgaatatgcattcgaaatta 8350523  T
Q  408 caatgttatttcttctgtctttttcagagcttatttcatgtaggt--ccttgcttggggaggaactagtcgtagtctaaatataatgacttga 498  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  ||| || |||||||||||||||||| |||||||||  |||||||||    
T  8350524 caatgttatttcttctgtctttttcagagcttatttcatgtaagtaacctagcatggggaggaactagtcgtggtctaaatagtatgacttga 8350616  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 309 - 443
Target Start/End: Original strand, 8353531 - 8353666
Alignment:
Q  309 agaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatatttt-gtggctgctttggacacttgttaattatgcattcgaaatta 407  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| | |||| | |||||||||||    
T  8353531 agaacatttttgggaccacatagaactttgaaaattcttctacgtatgcatatatttttgtggctgctttggacacttgctgattaagtattcgaaatta 8353630  T
Q  408 caatgttatttcttctgtctttttcagagcttattt 443  Q
    ||| ||||||||||||||||||||||||||||||||    
T  8353631 caacgttatttcttctgtctttttcagagcttattt 8353666  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8350118 - 8350207
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaaaaagtga 90  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8350118 ttttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtga 8350207  T

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Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 8352862 - 8353004
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaaaaagtgacttggtttac 100  Q
    |||||| ||| |||| |||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||||||| |    
T  8352862 ttttcatcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgc 8352961  T
Q  101 a----aatgaaatgaagatttaggtgtgacttgaaattgcagt 139  Q
    |    |||||||||| ||||||||||||||||||||| |||||    
T  8352962 actgcaatgaaatgaggatttaggtgtgacttgaaatcgcagt 8353004  T

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Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8252964 - 8253046
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaa 83  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8252964 ttttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8260704 - 8260793
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaaaaagtga 90  Q
    |||||| ||| ||||||||||||||||||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||||||||||    
T  8260704 ttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtga 8260793  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8356429 - 8356508
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccat 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||  ||||||| ||||||||||| | | |||||||||||||    
T  8356429 ttttgagcataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8360602 - 8360681
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccat 80  Q
    |||||| ||| ||||||||||||||||||| ||||||||||  |||| || ||||||||||||| |||||||||||||||    
T  8360602 ttttcaacataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8334137 - 8334214
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagcc 78  Q
    ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||| | | ||| |||||||||    
T  8334137 ttttcagcattctcataaacttgtgaagatgagtttgaagaaggaccaaaacaattgaagtatggtgatatcaaagcc 8334214  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 8258597 - 8258682
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaaaaa 86  Q
    |||||| ||| ||||||||||||||||||||||||||||||| | ||||| ||| | || |  ||||||||||||||||| |||||    
T  8258597 ttttcatcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaa 8258682  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 8339984 - 8340040
Alignment:
Q  247 atagaatgattacaaaaaggttaggaaggtactatgttagtccatttgcttagcgag 303  Q
    ||||||| || |||||||  |||||||||||||||||||||||||||||||||||||    
T  8339984 atagaatcataacaaaaaatttaggaaggtactatgttagtccatttgcttagcgag 8340040  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 8353006 - 8353054
Alignment:
Q  162 tgcaaagcttaaatgatttagttgtaatattggtttaaattctggttat 210  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  8353006 tgcaaagcttaaatgatttagttgtaatattggtttgaattcaggttat 8353054  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 8265670 - 8265755
Alignment:
Q  1 ttttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaaaaa 86  Q
    |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||| |||||    
T  8265670 ttttcatcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaa 8265755  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 8350237 - 8350274
Alignment:
Q  102 aatgaaatgaagatttaggtgtgacttgaaattgcagt 139  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  8350237 aatgaaatgaagatttaggtgtgacttaaaattgcagt 8350274  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 8356620 - 8356672
Alignment:
Q  260 aaaaaggttaggaaggtactatgttagtccatttgcttagcgagcaaggagaa 312  Q
    ||||||||||||||||| ||| ||| | ||||||||||||| |||||||||||    
T  8356620 aaaaaggttaggaaggttctacgttggaccatttgcttagcaagcaaggagaa 8356672  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 8360837 - 8360889
Alignment:
Q  260 aaaaaggttaggaaggtactatgttagtccatttgcttagcgagcaaggagaa 312  Q
    ||||||||||||||||| ||| |||| |||||||||||||| ||||| |||||    
T  8360837 aaaaaggttaggaaggttctacgttactccatttgcttagcaagcaaagagaa 8360889  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 8256216 - 8256267
Alignment:
Q  392 tatgcattcgaaattacaatgttatttcttctgtctttttcagagcttattt 443  Q
    |||| |||||| ||||||||||| |||| | |||||||||||||||||||||    
T  8256216 tatgtattcgatattacaatgttgtttcgtttgtctttttcagagcttattt 8256267  T

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