View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20978_low_8 (Length: 357)
Name: NF20978_low_8
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20978_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 225 - 343
Target Start/End: Complemental strand, 4884739 - 4884621
Alignment:
| Q |
225 |
gtaaagaagaaaataaactttgtttctgtcaattttgtgtacatatggttaaaattttagtgctatgataaaatgttatatatggttttgattttgttaa |
324 |
Q |
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| T |
4884739 |
gtaaagaagaaaataaactttgtttctgtcaattttgtgtacatatggttaaaattttagtgctatgataaaatgttatatatggttttgattttgttaa |
4884640 |
T |
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| Q |
325 |
gttgaagacttgaactaga |
343 |
Q |
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| T |
4884639 |
gttgaagacttgaactaga |
4884621 |
T |
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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 4884949 - 4884861
Alignment:
| Q |
16 |
agagagatagaagaagaggacgtgttgctgtgtggagacctcatttggagagtatttctgagtcaccaacaaatcatctataacggttg |
104 |
Q |
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| T |
4884949 |
agagagacagaagaagaggacgtgttgctgtgtggagacctcatttggagagtatttctgagtcaccaacaaatcatctataacggttg |
4884861 |
T |
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