View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20979_high_1 (Length: 655)

Name: NF20979_high_1
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20979_high_1
NF20979_high_1
[»] chr5 (6 HSPs)
chr5 (285-603)||(27246115-27246433)
chr5 (9-285)||(27246505-27246786)
chr5 (395-559)||(11245324-11245491)
chr5 (400-559)||(22867974-22868137)
chr5 (441-559)||(6967337-6967456)
chr5 (403-494)||(17535766-17535857)
[»] chr6 (15 HSPs)
chr6 (393-559)||(7201046-7201213)
chr6 (400-559)||(26497851-26498013)
chr6 (393-559)||(28847758-28847926)
chr6 (330-559)||(10669905-10670136)
chr6 (400-559)||(609616-609777)
chr6 (400-497)||(1112493-1112590)
chr6 (400-509)||(1522594-1522705)
chr6 (401-532)||(17364203-17364337)
chr6 (480-559)||(3361867-3361947)
chr6 (402-559)||(29288418-29288578)
chr6 (135-206)||(24204503-24204574)
chr6 (400-456)||(3361950-3362006)
chr6 (502-559)||(33986463-33986521)
chr6 (400-440)||(17902287-17902327)
chr6 (576-655)||(3361765-3361843)
[»] chr7 (10 HSPs)
chr7 (400-559)||(38190265-38190425)
chr7 (400-559)||(33540093-33540254)
chr7 (400-559)||(44767320-44767480)
chr7 (330-559)||(19468252-19468482)
chr7 (400-558)||(27224282-27224439)
chr7 (331-518)||(40230871-40231058)
chr7 (400-558)||(22317680-22317839)
chr7 (400-497)||(39608142-39608239)
chr7 (395-490)||(14802681-14802776)
chr7 (395-490)||(15249674-15249769)
[»] chr1 (13 HSPs)
chr1 (400-559)||(24892008-24892169)
chr1 (400-559)||(5882526-5882686)
chr1 (400-513)||(50509774-50509887)
chr1 (400-497)||(26687691-26687788)
chr1 (400-540)||(23688380-23688520)
chr1 (400-497)||(7380372-7380469)
chr1 (400-489)||(9672504-9672593)
chr1 (400-555)||(50262420-50262582)
chr1 (398-490)||(29864666-29864758)
chr1 (414-559)||(27564964-27565107)
chr1 (500-559)||(9672366-9672427)
chr1 (471-512)||(9672448-9672489)
chr1 (400-440)||(17387799-17387839)
[»] chr4 (8 HSPs)
chr4 (400-559)||(16061450-16061612)
chr4 (400-559)||(38138700-38138860)
chr4 (393-497)||(6087039-6087143)
chr4 (400-496)||(6131956-6132052)
chr4 (400-484)||(18886184-18886268)
chr4 (401-563)||(6166329-6166475)
chr4 (400-496)||(32727972-32728068)
chr4 (400-491)||(36441084-36441175)
[»] chr2 (7 HSPs)
chr2 (330-559)||(2104026-2104254)
chr2 (394-557)||(44259815-44259980)
chr2 (400-500)||(26290419-26290519)
chr2 (400-497)||(5868979-5869076)
chr2 (400-489)||(30707048-30707137)
chr2 (400-497)||(18242144-18242241)
chr2 (524-559)||(30706986-30707021)
[»] chr8 (11 HSPs)
chr8 (400-559)||(9946653-9946815)
chr8 (400-559)||(33474547-33474707)
chr8 (400-559)||(24534836-24534996)
chr8 (400-541)||(44004316-44004457)
chr8 (400-559)||(21466885-21467052)
chr8 (394-559)||(6976555-6976716)
chr8 (393-497)||(13751432-13751537)
chr8 (406-559)||(13569255-13569403)
chr8 (405-484)||(1738683-1738762)
chr8 (432-497)||(45231609-45231674)
chr8 (400-494)||(31661311-31661405)
[»] chr3 (6 HSPs)
chr3 (398-559)||(42624696-42624859)
chr3 (394-519)||(54561082-54561208)
chr3 (400-466)||(7741874-7741939)
chr3 (397-446)||(19902962-19903011)
chr3 (400-438)||(7650520-7650558)
chr3 (400-440)||(47043550-47043590)
[»] scaffold0005 (1 HSPs)
scaffold0005 (400-518)||(284268-284386)
[»] scaffold0125 (1 HSPs)
scaffold0125 (400-484)||(5771-5855)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 285 - 603
Target Start/End: Complemental strand, 27246433 - 27246115
Alignment:
Q  285 atatggttcaaaatataaggcaccaaagggtgatcctatcaacatggccgtccctatgaaacgagaggctcgactctaatagtaaaaattagcccttaat 384  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||||||||||| | | ||||||    
T  27246433 atatggttcaaaatataaggcaccaaagggtgatcctatcaacagggtcgtccctatgaaacaggaggctcgactctaatagtaaaaataaacacttaat 27246334  T
Q  385 nnnnnnnncgcacaattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaatta 484  Q
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27246333 aaaaaaaacgcacaattttttaaaagattaattttctatttaaattgaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaatta 27246234  T
Q  485 cttttactaaagatgtgttttttaacttagaaatagaacatggaacatgattttttacttagaaattgaaacatgtttannnnnnnnnnnngagtggggg 584  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||            |||||||||    
T  27246233 cttttactaaagatgtgttttttaacttagaaatagaacatgaaacatgattttttacttagaaattgaaacatgtttatttttcttttttgagtggggg 27246134  T
Q  585 tggggatattgagcaataa 603  Q
    |||||||||||||||||||    
T  27246133 tggggatattgagcaataa 27246115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 27246786 - 27246505
Alignment:
Q  9 tcgaagaatatgattggattcaatttatgcaaagcaagatttgaattaaattaaaacttcnnnnnnntgaggttttgaaaataaattatcaccaaatttg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  27246786 tcgaagaatatgattggattcaatttatgcaaagcaagatttgaattaaattaaaacttcaaaaaaatgaggttttgaaaataaattatcaccaaatttg 27246687  T
Q  109 tttcgaacttttcactaacttttaaaaccaaacttgtacaaagcgtgcaatctagaatgaacggttgttgtacaaaaactaacgacatcaatca-----a 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     |    
T  27246686 tttcgaacttttcactaacttttaaaaccaaacttgtacaaagcgtgcaatctagaatgaacgggtgttgtacaaaaactaacgacatcaatcaaaacaa 27246587  T
Q  204 aactaagaaaatgtaaacatctttatacaagcaacttcacaatccgccacagtcaaaagcttacgctctcgctcgactaaaa 285  Q
    |||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27246586 aactaagataatatcaacatatttatacaagcaacttcacaatccgccacagtcaaaagcttacgctctcgctcaactaaaa 27246505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 395 - 559
Target Start/End: Complemental strand, 11245491 - 11245324
Alignment:
Q  395 cacaatttttt-aaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttacta 493  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11245491 cacaattttttcaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccactgaaatcaaaattagcaattacttttacta 11245392  T
Q  494 aagatgtgttttttaacttagaaatag-aacatggaacatga-ttttttacttagaaattgaaacatg 559  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||||||||||  |||||||||||||    
T  11245391 aagatgtgtttttaaacttagaaatagaaacatggaacatgatttttttacttcaaaattgaaacatg 11245324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 400 - 559
Target Start/End: Complemental strand, 22868137 - 22867974
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| |    
T  22868137 ttttttaaaagattaatcttccatttaaattgaaaaaaacactcgtataatgattattagccactgaaatcataattagcaattatttttactaaagacg 22868038  T
Q  500 tgttttttaacttagaaatag-aacatggaacatga---ttttttacttagaaattgaaacatg 559  Q
    ||||||  ||||||||||||| ||||||||||||||   |||||||||||||||||| ||||||    
T  22868037 tgttttaaaacttagaaatagaaacatggaacatgatttttttttacttagaaattgcaacatg 22867974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 441 - 559
Target Start/End: Original strand, 6967337 - 6967456
Alignment:
Q  441 ctcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatgtgttttttaacttagaaatag-aacatggaacatgattttt 539  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || ||| ||||||||||| |||||| |||||| ||||||||||||    
T  6967337 ctcgtataatgattattagccactgaaattaaaattagcaattacttttactaaggacgtgctttttaacttataaatagaaacatgaaacatgattttt 6967436  T
Q  540 tacttagaaattgaaacatg 559  Q
    |||||| |||||||||||||    
T  6967437 tacttaaaaattgaaacatg 6967456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 403 - 494
Target Start/End: Original strand, 17535766 - 17535857
Alignment:
Q  403 tttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaa 494  Q
    |||||||||  |||||| |||||||||||||| |||||  |||||||||| ||||||||| ||||||||||||||||| ||| |||||||||    
T  17535766 tttaaaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattagcagttatttttactaa 17535857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 393 - 559
Target Start/End: Complemental strand, 7201213 - 7201046
Alignment:
Q  393 cgcacaattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttact 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  7201213 cgcacaattttttaaaagattaatcttctatttaaattgaaaataacacttgtataatgattattagccactgaaatcaaaattagcaattatttttact 7201114  T
Q  493 aaagatgtgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  7201113 aaagacgtgttttttaacttagaaatagaaacatgaaacatgatttttgacttagaaattgaaacatg 7201046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 26497851 - 26498013
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaa-taacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagat 498  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  26497851 ttttttaaaagattaatcttctatttaaattgaaaaataacacacgtataatgattattagccaccgaaatcaaaattagcaattatttttactaaagac 26497950  T
Q  499 gtgttttttaacttagaaatag-aacatggaacatga-ttttttacttagaaattgaaacatg 559  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  26497951 gtgttttttaacttagaaatagaaacatggaacatgatttttttatttagaaattgaaacatg 26498013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 393 - 559
Target Start/End: Original strand, 28847758 - 28847926
Alignment:
Q  393 cgcacaattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttact 492  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  28847758 cgcataattttttaaaagattaatcctctatttaaattaaaaataacacatgtataatgattattagccactgaaatcaaaattaacaattatttttact 28847857  T
Q  493 aaagatgtgttttttaacttagaaat-agaacatggaacatga-ttttttacttagaaattgaaacatg 559  Q
    |||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||||    
T  28847858 aaagatgtgttttttaactttgaaataaaaacatggaacatgatttttttacttagaaattgaaacatg 28847926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 330 - 559
Target Start/End: Complemental strand, 10670136 - 10669905
Alignment:
Q  330 ggccgtccctatgaaacgagaggctcgactctaatagtaaaaattagcccttaatnnnnnnnncgcacaattttttaaaa--gattaatcttctatttaa 427  Q
    |||||||||||||||||  ||||||||||||| |||||||||||  |||||||||          |||||||||| ||||  || |||||||||||||||    
T  10670136 ggccgtccctatgaaactggaggctcgactctcatagtaaaaataggcccttaataaaaaaaaa-cacaatttttaaaaaaagaataatcttctatttaa 10670038  T
Q  428 attgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatgtgttttttaacttagaaatag-aacatg 526  Q
    ||| |||||||||  ||||||||||||||||| ||| |||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||| ||||||    
T  10670037 attaaaaataacatccgtataatgattattagtcactgaaatcaaaattagtaattagttttactaaaaatgtgttttttaatttagaaatagaaacatg 10669938  T
Q  527 gaacatgattttttacttagaaattgaaacatg 559  Q
    ||||||||||||||||||||||||| |||||||    
T  10669937 gaacatgattttttacttagaaattaaaacatg 10669905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 609616 - 609777
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||   || |||||||||||||||| ||||||| |||| |    
T  609616 ttttttaaaaggttaatcttctatttatattgaaaataacactcgtataatgattattagccatgaaagtcaaaattagcaattagttttactgaagagg 609715  T
Q  500 tgttttttaacttagaaatag-aacatggaacatga-ttttttacttagaaattgaaacatg 559  Q
    ||||||||||||| ||||||| |||||| ||||||| ||||||||||| |||||||||||||    
T  609716 tgttttttaacttggaaatagaaacatgaaacatgatttttttacttataaattgaaacatg 609777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 1112493 - 1112590
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  1112493 ttttttaaaagattaatcttctatttaaattgaaaataacattcgtataatggttattagccaccgaaattaaaattagcaattatttttactaaaga 1112590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 400 - 509
Target Start/End: Complemental strand, 1522705 - 1522594
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtata--atgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  1522705 ttttttaagagattaatcttctatttaaattgaaaataacactcgtataatatggttattagccaccgaaattaaaattagctattatttttattaaaga 1522606  T
Q  498 tgtgttttttaa 509  Q
     |||||| ||||    
T  1522605 cgtgtttgttaa 1522594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 401 - 532
Target Start/End: Complemental strand, 17364337 - 17364203
Alignment:
Q  401 tttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaa---aga 497  Q
    |||||||||||  |||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||||||||||||||| ||||| |||   | |    
T  17364337 tttttaaaagagcaatcttctatttaaattgaaaagaacagccgtataatgattattagccaccg-aatcaaaattagcaattatttttattaagggaca 17364239  T
Q  498 tgtgttttttaacttagaaatag-aacatggaacat 532  Q
     || |||||| |||||||||||| ||||||||||||    
T  17364238 cgtttttttttacttagaaatagaaacatggaacat 17364203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 480 - 559
Target Start/End: Complemental strand, 3361947 - 3361867
Alignment:
Q  480 aattacttttactaaagatgtgttttttaacttagaaatagaa-catggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||| ||||||||||||  || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3361947 aattatttttactaaagacatgatttttaacttagaaatagaaacatggaacatgattttttacttagaaattgaaacatg 3361867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 402 - 559
Target Start/End: Original strand, 29288418 - 29288578
Alignment:
Q  402 ttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttacta---aagat 498  Q
    ||||||||||| |||||||||||||||||||||| ||||  |||||||| ||||||||| |||||||| |||||||  | ||| ||||||||   || |     
T  29288418 ttttaaaagatcaatcttctatttaaattgaaaagaacatccgtataataattattagcaaccgaaattaaaattaatatttatttttactaaggaacaa 29288517  T
Q  499 gtgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    || |||||| | |||||||||| |||||||||||||  ||||||||||||||| | ||||||    
T  29288518 gt-tttttttatttagaaatagaaacatggaacatgtgtttttacttagaaatagtaacatg 29288578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 24204574 - 24204503
Alignment:
Q  135 accaaacttgtacaaagcgtgcaatctagaatgaacggttgttgtacaaaaactaacgacatcaatcaaaac 206  Q
    ||||||||||||   ||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  24204574 accaaacttgtatggagcttgtaatctagaatgaacgggtgttgtacaaaaactaatgacatcaatcaaaac 24204503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 456
Target Start/End: Complemental strand, 3362006 - 3361950
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattat 456  Q
    |||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||    
T  3362006 ttttttaaaagactaatcttctatttaaattaaaaataacacttgtataatgaatat 3361950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 559
Target Start/End: Complemental strand, 33986521 - 33986463
Alignment:
Q  502 ttttttaacttagaaatagaa-catggaacatgattttttacttagaaattgaaacatg 559  Q
    |||||||||||||||||| || |||||| ||| ||||||||||||||||||||||||||    
T  33986521 ttttttaacttagaaataaaaacatggagcataattttttacttagaaattgaaacatg 33986463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 17902287 - 17902327
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataaca 440  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  17902287 tttttaaaaagaataatcttctatttaaattgaaaataaca 17902327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 655
Target Start/End: Complemental strand, 3361843 - 3361765
Alignment:
Q  576 gagtgggggtggggatattgagcaataannnnnnncttgaggcacatctcgattaaattctttgcactctccaaagaacg 655  Q
    ||||||||||||| ||| ||||||||||       |||||||| || |||||||||||||||||||||  ||||||||||    
T  3361843 gagtgggggtggg-ataatgagcaataatatttttcttgaggcccagctcgattaaattctttgcacttcccaaagaacg 3361765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 5e-64; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 38190265 - 38190425
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| |    
T  38190265 ttttttaaaagattaatattctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagaaattatttttactaaagacg 38190364  T
Q  500 tgttttttaacttagaaat-agaacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||    
T  38190365 tgttttttaacttagaaataaaaacatgaaacatgattttttacttagaaattgaaacatg 38190425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 33540093 - 33540254
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||||      
T  33540093 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgatgattaaccactgaaatcaaaattagcaattatttttactaaagacc 33540192  T
Q  500 tgttttttaacttagaaatag-aacatggaacatga-ttttttacttagaaattgaaacatg 559  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  33540193 tgttttttaacttagaaattgaaacatggaacatgatttttttacttagaaattgaaacatg 33540254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 44767320 - 44767480
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||| |      
T  44767320 ttttttataagattaatcttctatttaaattgaaaataacactcgtataatgattattagttaccgaaatcaaaattagcaattatttttactaaataca 44767419  T
Q  500 tgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  44767420 tgttttttaacttagaaatagaaacatggaatgtgattttttacttagaaattgaaacatg 44767480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 330 - 559
Target Start/End: Original strand, 19468252 - 19468482
Alignment:
Q  330 ggccgtccctatgaaacgagaggctcgactctaatagtaaaaattagcccttaatnnnnnnnncgcacaatttt-ttaaaagattaatcttctatttaaa 428  Q
    |||||||||||| |||   ||||||||||||| ||||||||||| |||| |||||         |||||||||| |||||||||||||||| ||||||||    
T  19468252 ggccgtccctataaaatcggaggctcgactctcatagtaaaaataagcctttaataataaaaatgcacaatttttttaaaagattaatcttttatttaaa 19468351  T
Q  429 ttgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatgtgttttttaacttagaaatag-aacatgg 527  Q
    |||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||| |||||||||| || ||| ||||||||||||||||| || ||||    
T  19468352 ttgaaaataacattcgtataatgattattagccacc-aaatataaattagcaattatttttactaaaaatatgtattttaacttagaaatagaaatatgg 19468450  T
Q  528 aacatgattttttacttagaaattgaaacatg 559  Q
    ||||||||||||||||||||||||||||||||    
T  19468451 aacatgattttttacttagaaattgaaacatg 19468482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 400 - 558
Target Start/End: Original strand, 27224282 - 27224439
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||      
T  27224282 ttttttataagattaatcttctatttaaa--gaaaataacactcgtataatgattattagtcaccgaaatcaaaattagcaattatttttactgaagaca 27224379  T
Q  500 tgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacat 558  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  27224380 tgttttttaacttagaaatagaaacatgcaacatgattttttacttagaaattgaaacat 27224439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 331 - 518
Target Start/End: Complemental strand, 40231058 - 40230871
Alignment:
Q  331 gccgtccctatgaaacgagaggctcgactctaatagtaaaaattagcccttaatnnnnnnnncgcacaat-tttttaaaagattaatcttctatttaaat 429  Q
    ||||| |||||||||| |||||||||||||| ||||||||||| ||| ||||||          |||||| |||||||||||||||||||||||||||||    
T  40231058 gccgttcctatgaaactagaggctcgactctcatagtaaaaataagcacttaataaaaaacattcacaatatttttaaaagattaatcttctatttaaat 40230959  T
Q  430 tgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatgtgttttttaacttagaaat 518  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||    
T  40230958 tgagaataacactcgtataatgattattagccaccgaaatcaaaattaacaattatttttac-aaagacgtgttttttaacttagaaat 40230871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 400 - 558
Target Start/End: Original strand, 22317680 - 22317839
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||| |||||||| ||| |||||||||||||| ||||| |||||||| ||| |    
T  22317680 ttttttaaaagattcatcttctatttaaattgaaaatactactcgtataattattattagtcactgaaatcaaaattagaaattatttttactacagacg 22317779  T
Q  500 tgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacat 558  Q
    |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  22317780 tgttttttaacttataaatagaaacatgaaacatgattttttacttagaaattgaaacat 22317839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 497
Target Start/End: Complemental strand, 39608239 - 39608142
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||    
T  39608239 ttttttaagagattaatcttctatttaaattgaaaataacactggtataattgttattagccaccgaaattaaaattaacaattatttttactaaaga 39608142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 395 - 490
Target Start/End: Complemental strand, 14802776 - 14802681
Alignment:
Q  395 cacaattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattactttta 490  Q
    |||||||||||||||||  |||||| |||||||||||||| |||||  |||||||||| ||||||||| |||||||||||||| |||||| |||||    
T  14802776 cacaattttttaaaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattattttta 14802681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 395 - 490
Target Start/End: Complemental strand, 15249769 - 15249674
Alignment:
Q  395 cacaattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattactttta 490  Q
    |||||||||||||||||  |||||| |||||||||||||| |||||  |||||||||| ||||||||| |||||||||||||| |||||| |||||    
T  15249769 cacaattttttaaaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattattttta 15249674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 7e-60; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 24892008 - 24892169
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||| |||||||||||| |    
T  24892008 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaaccaaaattaacaattatttttactaaagacg 24892107  T
Q  500 tg-ttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    || ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  24892108 tgcttttttaacttagaaatagaaacatggaacctgattttttacttagaaattgaaacatg 24892169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 5882526 - 5882686
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    |||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||  ||||| |||||||||||| |    
T  5882526 tttttttaaagattaatcttctattaaaattgaaaataacgctcgtataataattattaaccaccgaaatcaaaattaataattatttttactaaagacg 5882625  T
Q  500 tgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  5882626 tgttttttaacttagaaattgaaacatggaacatgattttttacttagaaattgaaacatg 5882686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 400 - 513
Target Start/End: Complemental strand, 50509887 - 50509774
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |    
T  50509887 ttttttaaaagattaattttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaaagacg 50509788  T
Q  500 tgttttttaactta 513  Q
    ||||||||||||||    
T  50509787 tgttttttaactta 50509774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 26687691 - 26687788
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||||||||||    
T  26687691 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattaaccaccgaaattaaaattaacaattatttttactaaaga 26687788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 400 - 540
Target Start/End: Original strand, 23688380 - 23688520
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||  |||||||||||| |||||| |||||||||| | |    
T  23688380 ttttttaaaagaataatcttctatttaaattgaaaataacactcgtataataattatttgtcactaaaatcaaaattaacaattatttttactaaa-acg 23688478  T
Q  500 tgttttttaacttagaaat-agaacatggaacatgatttttt 540  Q
    |||||||||||||||| || | || |||||||||||||||||    
T  23688479 tgttttttaacttagacataaaaatatggaacatgatttttt 23688520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 7380372 - 7380469
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||||    
T  7380372 ttttttaaaagattaatcttctatttaaattgaaaataacactcatattatggttattagtcaccgaaattaaaattagcaattatttttactaaaga 7380469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 9672593 - 9672504
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattactttt 489  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  9672593 tttttttaaagattaatcttctatttaaatttaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattattttt 9672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 555
Target Start/End: Complemental strand, 50262582 - 50262420
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgatta-------ttagccaccgaaatcaaaattagcaattacttttact 492  Q
    ||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||       ||| |||||  |||||||||||||||||| ||||  |    
T  50262582 tttttaaaaagaataatcttctatttaaattgaaaataata-tcgtataatgattaatgattattaaccaccataatcaaaattagcaattatttttttt 50262484  T
Q  493 aaagatgtgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaa 555  Q
    || || ||||||||| |||||||||||| |||||| |||||| |||||||||||||||| ||||    
T  50262483 aaggacgtgtttttttacttagaaatagaaacatgaaacatgtttttttacttagaaatagaaa 50262420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 398 - 490
Target Start/End: Original strand, 29864666 - 29864758
Alignment:
Q  398 aattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattactttta 490  Q
    ||||||| ||||||  |||||||||||||||||||||||||||   ||||||||||||||||||||| |||| |||||||||||||| |||||    
T  29864666 aatttttaaaaagaacaatcttctatttaaattgaaaataacatcagtataatgattattagccaccaaaattaaaattagcaattattttta 29864758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 414 - 559
Target Start/End: Complemental strand, 27565107 - 27564964
Alignment:
Q  414 aatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatgtgttttttaactta 513  Q
    |||||| |||||||||||||||||||| | ||||||||||||||| ||||  |||| ||||||| |||||  ||||||||| ||  ||||||||| ||||    
T  27565107 aatcttttatttaaattgaaaataaca-tggtataatgattattaaccactaaaattaaaattaacaattt-ttttactaaggacatgtttttta-ctta 27565011  T
Q  514 gaaatagaa-catggaacatgattttttacttagaaattgaaacatg 559  Q
     |||||||| ||| ||||||| ||||||||||| |||| ||||||||    
T  27565010 aaaatagaaacatagaacatgtttttttacttaaaaatagaaacatg 27564964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 9672427 - 9672366
Alignment:
Q  500 tgttttttaacttagaaatagaa-catggaacatgatttttt-acttagaaattgaaacatg 559  Q
    |||||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||||    
T  9672427 tgttttttaacttaaaaataaaagcatggaacatgatttttttacttagaaattgaaacatg 9672366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 512
Target Start/End: Complemental strand, 9672489 - 9672448
Alignment:
Q  471 aaaattagcaattacttttactaaagatgtgttttttaactt 512  Q
    |||||||||||||| |||||||||||| ||||||| ||||||    
T  9672489 aaaattagcaattatttttactaaagacgtgttttataactt 9672448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 17387839 - 17387799
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataaca 440  Q
    ||||||||||||  ||||||| |||||||||||||||||||    
T  17387839 ttttttaaaagagcaatcttcaatttaaattgaaaataaca 17387799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 16061450 - 16061612
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaatta-cttttactaaagat 498  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||||||||     
T  16061450 ttttttaaaagatcaatcttctatttaaattgaaaataacacttgtataatggttattagccaccgaaatcaaaattagcaattattttttactaaagac 16061549  T
Q  499 gtg-ttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  16061550 gtgcttttttaacttagaaatagaaacatggaacctgattttttacttagaaattgaaacatg 16061612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 400 - 559
Target Start/End: Complemental strand, 38138860 - 38138700
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || |||||||||| | |||||| ||||||||||||      
T  38138860 ttttttaaaagattaatattttatttaaattgaaaataacactcgtataatgattattaacccccaaaatcaaaatcaacaattatttttactaaagaca 38138761  T
Q  500 tgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||| |||||||||||| || |||||| || |||||||||||||||||||||||| ||||    
T  38138760 tgtttcttaacttagaaaaagaaacatgaaatatgattttttacttagaaattgaatcatg 38138700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 393 - 497
Target Start/End: Original strand, 6087039 - 6087143
Alignment:
Q  393 cgcacaattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttact 492  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  6087039 cgcacaattttttaaaatattaatcttatatttaaattgaaaataacactcgtataatggttattagccaccgaaattaaaattagcaattatttttact 6087138  T
Q  493 aaaga 497  Q
    |||||    
T  6087139 aaaga 6087143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 400 - 496
Target Start/End: Complemental strand, 6132052 - 6131956
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaag 496  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  6132052 tttttaaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaattaaaattagtaattatttttactaaag 6131956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 18886268 - 18886184
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaatta 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  18886268 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattatccaccgaaattaaaattagcaatta 18886184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 401 - 563
Target Start/End: Complemental strand, 6166475 - 6166329
Alignment:
Q  401 tttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatgt 500  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||                    
T  6166475 tttttaaaagattaatcttctatttaaatttaaaataacactcgtataatgattattagccaccgaaatcaaaattaaaaatta---------------- 6166392  T
Q  501 gttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatgttta 563  Q
     ||||||||||||||||||| || ||| ||||||||||||||| ||||||||||||||||||||    
T  6166391 -ttttttaacttagaaatagaaatatgaaacatgattttttacatagaaattgaaacatgttta 6166329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 400 - 496
Target Start/End: Original strand, 32727972 - 32728068
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaag 496  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||| |||||| |||||||||||    
T  32727972 ttttttaaaagattaatcttctatttaaattgaaaataacactcctataatggttattagccaccaaaattaaaattaacaattatttttactaaag 32728068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 400 - 491
Target Start/End: Original strand, 36441084 - 36441175
Alignment:
Q  400 ttttttaaaagattaa-tcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttac 491  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||    
T  36441084 tttttttaaagattaaatcttctatttaaactgaaaataacactcgtataatta-tattagccactgaaatcaaaattagcaattatttttac 36441175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 4e-58; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 330 - 559
Target Start/End: Complemental strand, 2104254 - 2104026
Alignment:
Q  330 ggccgtccctatgaaacgagaggctcgactctaatagtaaaaattagcccttaatnnnnnnnncgcacaattttttaaaagattaatcttctatttaaat 429  Q
    ||||||||||||||||| ||||||||| |||| || |||||||| ||||||||||        |  | | ||||||||||||||||||||||||||||||    
T  2104254 ggccgtccctatgaaactagaggctcggctctcatggtaaaaataagcccttaataaaaaaaccata-atttttttaaaagattaatcttctatttaaat 2104156  T
Q  430 tgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatgtgttttttaacttagaaata-gaacatgga 528  Q
    ||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |||||| ||||| || ||||||||||||||||||  |||||| |    
T  2104155 tgaaaataacactagtctaatgattattagccaccaaaatcaaaattagcaattatttttacgaaagacgtattttttaacttagaaatataaacatgaa 2104056  T
Q  529 acatgattttttacttagaaattgaaacatg 559  Q
    |||||| ||||||||||||||||||||||||    
T  2104055 acatga-tttttacttagaaattgaaacatg 2104026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 394 - 557
Target Start/End: Original strand, 44259815 - 44259980
Alignment:
Q  394 gcacaattttttaaaa-gattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttact 492  Q
    |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||    
T  44259815 gcacaattttttaaaaagattaatcttctagttaaattgaaaattacactcgtataattattattagccactgaaatcaaaattagcaattatttttact 44259914  T
Q  493 aaagatgtgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaaca 557  Q
    ||||| |||||||| ||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  44259915 aaagacgtgtttttaaacttagaaatagaaacataaaacatgattttttacttagaaattgaaaca 44259980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 400 - 500
Target Start/End: Complemental strand, 26290519 - 26290419
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||    
T  26290519 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatggttattagccatcgaaattaaaattagcaattatttttactaaagatg 26290420  T
Q  500 t 500  Q
    |    
T  26290419 t 26290419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 5868979 - 5869076
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| ||||| ||||||||||||    
T  5868979 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaattaaaattagaaattatttttactaaaga 5869076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 30707137 - 30707048
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattactttt 489  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  30707137 ttttttaaaagattaattttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattattttt 30707048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 18242144 - 18242241
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||| |||||||||||||| ||||||||||||    
T  18242144 ttttttaaaagattaatcttctatttaaatcgaaaataacactcgtataatggttattaaccaccaaaattaaaattagcaattatttttactaaaga 18242241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 559
Target Start/End: Complemental strand, 30707021 - 30706986
Alignment:
Q  524 atggaacatgattttttacttagaaattgaaacatg 559  Q
    |||||||||||||||||||||| |||||||||||||    
T  30707021 atggaacatgattttttacttaaaaattgaaacatg 30706986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 1e-55; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 400 - 559
Target Start/End: Complemental strand, 9946815 - 9946653
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||    
T  9946815 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattaaccaccaaaatcaaaattaccaattatttttactaaagatg 9946716  T
Q  500 tg-ttttttaacttagaaatag-aacatggaacatga-ttttttacttagaaattgaaacatg 559  Q
    || |||||||||||| |||||| |||||||||  ||| |||||||||||||||||||||||||    
T  9946715 tgcttttttaacttaaaaatagaaacatggaatctgatttttttacttagaaattgaaacatg 9946653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 400 - 559
Target Start/End: Complemental strand, 33474707 - 33474547
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||||||||||||| ||||||||| ||||||||| || |||||||||||| ||| || |||||||||||||||||||| |||||||||||| |    
T  33474707 ttttttaaaagattaatcttcaatttaaattaaaaataacattcatataatgattatcagctactgaaatcaaaattagcaattatttttactaaagacg 33474608  T
Q  500 tgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33474607 tgtttttaaacttagaaatagaaacatggaacatgattttttagttagaaattgaaacatg 33474547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 400 - 559
Target Start/End: Complemental strand, 24534996 - 24534836
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||     
T  24534996 ttttttaaaagattaattttctgtttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaaa-atc 24534898  T
Q  500 tg-ttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    || |||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  24534897 tgtttttttaatttagaaatagaaacatggaacataattctttacttagaaattgaaacatg 24534836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 400 - 541
Target Start/End: Original strand, 44004316 - 44004457
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |||||||||||| |    
T  44004316 ttttttaaaagataaatcttctatttaaattgaaaataacactcgtataatgattattagccatcaaaatcaaaattaacaattatttttactaaagacg 44004415  T
Q  500 tgttttttaacttagaaatag-aacatggaacatgatttttta 541  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||    
T  44004416 tgttttttaac-tagaaatagaaacatggaacatgacttttta 44004457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 400 - 559
Target Start/End: Original strand, 21466885 - 21467052
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||   ||||||||||||||||||| |||||||||||| |    
T  21466885 ttttttaaaagattaatcttctgtttatattgaaaataacactcttataatgattattagccatgaaaatcaaaattagcaattagttttactaaagagg 21466984  T
Q  500 tgttttttaacttagaaatag--------aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||||||||||| |||||||        |||||| ||||||||||||||| ||||||||||||||||    
T  21466985 tgttttttaacttggaaatagaaacatgaaacatgaaacatgattttttacatagaaattgaaacatg 21467052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 394 - 559
Target Start/End: Original strand, 6976555 - 6976716
Alignment:
Q  394 gcacaattttttaaaaga-ttaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttact 492  Q
    |||||||||||||||| | ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  6976555 gcacaattttttaaaaaaattattcttcaatttaaattgaaaataacattcgtataatgattattagccaccaaaattaaaattagcaattatttttact 6976654  T
Q  493 aaagatgtgttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||| || |||||||      |||||| ||||||||||||||||||||| |||||||||||||||||    
T  6976655 aaagacgtatttttta------aaatagtaacatggaacatgattttttatttagaaattgaaacatg 6976716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 393 - 497
Target Start/End: Original strand, 13751432 - 13751537
Alignment:
Q  393 cgcacaatttttt-aaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttac 491  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||    
T  13751432 cgcacaattttttgaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccatcgaaattaaaattagcaattatttttac 13751531  T
Q  492 taaaga 497  Q
    ||||||    
T  13751532 taaaga 13751537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 406 - 559
Target Start/End: Original strand, 13569255 - 13569403
Alignment:
Q  406 aaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatgtgtttt 505  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||        ||  ||||||||||||||||||| ||||| ||| || |||||||    
T  13569255 aaaaaattaatcttctatttatgttgaaaataacactcgtataatgat--------actaaaatcaaaattagcaattatttttattaaggacgtgtttt 13569346  T
Q  506 ttaacttagaaataga---acatggaacatgattttttacttagaaattgaaacatg 559  Q
    ||||||||||||||||   | ||||||||||  |||||||||| ||||| |||||||    
T  13569347 ttaacttagaaatagaaacatatggaacatgggtttttacttaaaaattaaaacatg 13569403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 1738762 - 1738683
Alignment:
Q  405 taaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaatta 484  Q
    |||| |||||||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||| ||||||    
T  1738762 taaatgattaatcttttatttaaattggaaataacacttgtataatgattatgagccaccgaaattaaaattaccaatta 1738683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 45231674 - 45231609
Alignment:
Q  432 aaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    |||| ||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||    
T  45231674 aaaaaaacactcgtataatggttattagccaccaaaattaaaattagcaattatttttactaaaga 45231609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 400 - 494
Target Start/End: Original strand, 31661311 - 31661405
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaa 494  Q
    ||||||||||||  |||||||||||| |||||||||||||   ||||||||||| ||||  || | ||||||||||||||||||| |||| ||||    
T  31661311 ttttttaaaagaacaatcttctatttgaattgaaaataacttccgtataatgatcattattcatcaaaatcaaaattagcaattattttttctaa 31661405  T

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Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 398 - 559
Target Start/End: Complemental strand, 42624859 - 42624696
Alignment:
Q  398 aattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaaga 497  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  42624859 aattttttaaaagattaatcttctatttaaattgatattaacactcgtataatggttattagccaccgaaattaaaattagcaattatttttattaaaga 42624760  T
Q  498 tgtg-ttttttaacttagaaatag-aacatggaacatgattttttacttagaaattgaaacatg 559  Q
     ||| | ||| || |||||||||| |||||||||| | |||||||||||| |||||||||||||    
T  42624759 cgtgctatttcaatttagaaatagaaacatggaacctaattttttacttaaaaattgaaacatg 42624696  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 394 - 519
Target Start/End: Complemental strand, 54561208 - 54561082
Alignment:
Q  394 gcacaattttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttacta 493  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  54561208 gcacaatttttttaaagattaatcttctatttaaattgaaaataacactcatataatgattattagctaccaaaatcaaaattagcaattagttttacta 54561109  T
Q  494 aagatgtg-ttttttaacttagaaata 519  Q
    |||| ||| ||||||||||||||||||    
T  54561108 aagacgtgtttttttaacttagaaata 54561082  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 400 - 466
Target Start/End: Original strand, 7741874 - 7741939
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccga 466  Q
    ||||||||||||  |||||| |||||||||||||||||||| ||||||||| |||||||||||||||    
T  7741874 ttttttaaaagagaaatcttatatttaaattgaaaataaca-tcgtataataattattagccaccga 7741939  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 19902962 - 19903011
Alignment:
Q  397 caattttttaaaagattaatcttctatttaaattgaaaataacactcgta 446  Q
    ||||||||||||||| || |||||||||||||||||||||||||| ||||    
T  19902962 caattttttaaaagaatattcttctatttaaattgaaaataacacccgta 19903011  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 7650558 - 7650520
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataa 438  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  7650558 ttttttaaaagagcaatcttctatttaaattgaaaataa 7650520  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 47043550 - 47043590
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataaca 440  Q
    |||||| ||||| |||||||||||||||| |||||||||||    
T  47043550 tttttttaaagaataatcttctatttaaactgaaaataaca 47043590  T

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Target: scaffold0005 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 284268 - 284386
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaattacttttactaaagatg 499  Q
    |||||||| ||||||| ||||||| |||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||    
T  284268 ttttttaagagattaaacttctatctaaattaaaaataacactcgcataatgattattaaccaccgaaattaaaattagcaatta-ttttattaaagatg 284366  T
Q  500 tg-ttttttaacttagaaat 518  Q
    || |||||||||||||||||    
T  284367 tgtttttttaacttagaaat 284386  T

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Target: scaffold0125 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 5771 - 5855
Alignment:
Q  400 ttttttaaaagattaatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaatcaaaattagcaatta 484  Q
    ||||||||||||  ||||||| ||||||||| |||| ||||  | ||||||||||||||||||||||||||||||||||||||||    
T  5771 ttttttaaaagagcaatcttcaatttaaattaaaaacaacatccatataatgattattagccaccgaaatcaaaattagcaatta 5855  T

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