View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20979_high_13 (Length: 225)
Name: NF20979_high_13
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41621043 - 41620836
Alignment:
| Q |
1 |
cacaaaatgacgagtttggatcaatgtttttggaatgcaaaaatttactttcgccnnnnnnncaacaaagcaatgttgtttatgttaagaggcaaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41621043 |
cacaaaatgacgagtttggatcaatggttttggaatgcaaaaatttactttcgcctttttttcaacaaagcaatgttgtttatgttaagaggcaaagaaa |
41620944 |
T |
|
| Q |
101 |
ataagtttcataatttagctagggctgcatcacaatcttgttctcaggtttttaaccaagctcctgattgtatcttgcatatcattgagaatgaaatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41620943 |
ataagtttcataatttagctagggctgcatcacagtcttgttctcaggtttttaaccaagctcctgattgtatcttgcatatcattgagaatgaaatggt |
41620844 |
T |
|
| Q |
201 |
gtaattat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
41620843 |
gtaattat |
41620836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 41621214 - 41621104
Alignment:
| Q |
12 |
gagtttggatcaatgtttttggaatgcaaaaatttactttcgccnnnnnnncaacaaagcaatgttgtttatgttaagaggcaaagaaaataagtttcat |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
41621214 |
gagtttggatcaatggttttggaatgcaaaaatttactttcgtctttttttcaaaaatgcaatgttgttcatgttaagaggcaaggaaaa-------cat |
41621122 |
T |
|
| Q |
112 |
aatttagctagggctgca |
129 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41621121 |
aatttagctagggctgca |
41621104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University