View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20979_high_8 (Length: 250)
Name: NF20979_high_8
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_high_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 8036409 - 8036171
Alignment:
| Q |
13 |
aaaatataagtataaatttttt-gaagatattacatgttaatctagaaaagaatattgtaattgttttttcaggggaatattgtaattgattgtttataa |
111 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8036409 |
aaaatataagtataattttttttgaagatattacatgttaatctagaaaagaatattgtaattgttttttcaggggaatattgtaattcattgtttataa |
8036310 |
T |
|
| Q |
112 |
ggttaattttaccattttaatatgatatgtatttcatgatgttattatgaggtatgtataaaaatagaaaataaaataatgttattccacttgttatcat |
211 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8036309 |
ggttgattttaccattttaatatgatatgtatttcatcatgttattctgaggtatgtataaaaatagaaaataaaataatgttattccacttgttatcat |
8036210 |
T |
|
| Q |
212 |
atgcacattgaacacattataacatacatatatgtttat |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8036209 |
atgcacattaaacacattataacatacatatatgtttat |
8036171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University