View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20979_low_10 (Length: 250)
Name: NF20979_low_10
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_low_10 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 506195 - 505956
Alignment:
| Q |
11 |
gaagaatgtgagaattgtgtttctgggaaaaccaatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctg |
110 |
Q |
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| T |
506195 |
gaagaatgtgagaattgtgtttctgggaaaaccaatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctg |
506096 |
T |
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| Q |
111 |
tccgaggccaaacattataccatgttttgagttgtgcttcatggtcggaatatgtggtggttgatatcaattaccttgttaaagttgatccaaacattaa |
210 |
Q |
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| T |
506095 |
tccgaggccaaacattataccatgttttgagttgtgcttcatggtcggaatatgtggtggttgatatcaattaccttcttagagttgatccaaacattaa |
505996 |
T |
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| Q |
211 |
tctagcttatgctagtttcatctcatgtgggttttcaact |
250 |
Q |
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| T |
505995 |
tctagcttatgctagtttcatctcatgtgggttttcaact |
505956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 20052088 - 20051850
Alignment:
| Q |
12 |
aagaatgtgagaattgtgtttctgggaaaaccaatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacacttcaaggttgtctgt |
111 |
Q |
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| T |
20052088 |
aagaatgtgtgaattgtgtttcaagaaaaaccaatctttgtcttacataccctgtgagattcaccggtctaatgcccgataacacttcaagattgtccgt |
20051989 |
T |
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| Q |
112 |
ccgaggccaaacattataccatgttttgagttgtgcttcatggtcggaatatgtggtggttgatatcaattaccttgttaaagttgatccaaacattaat |
211 |
Q |
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| T |
20051988 |
tcgaggccaaagactatatcatgttttgagttgtgctacatggtcggagtatgtcgttgttgatgtcaactaccttctcaaagtcgatccaaccattaat |
20051889 |
T |
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| Q |
212 |
ctagcttatgctagtttcatctcatgtgggttttcaact |
250 |
Q |
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| T |
20051888 |
ctagcttatgcaagtttcatctcatgtgggttttcaact |
20051850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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