View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20979_low_17 (Length: 205)
Name: NF20979_low_17
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 13558559 - 13558696
Alignment:
| Q |
1 |
aaatcttattgtctatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgct |
100 |
Q |
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| T |
13558559 |
aaatcttattgtatatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgct |
13558658 |
T |
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| Q |
101 |
actcgtgttgcatgtggtccaggccatggaataaggtt |
138 |
Q |
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| T |
13558659 |
actcgtgttgcatgtggtccagggcatggaataaggtt |
13558696 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 32924748 - 32924829
Alignment:
| Q |
14 |
tatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatct |
95 |
Q |
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| T |
32924748 |
tatgtgcaattttaaaatgagttggttttcttataaataggtgatgattgtattgccatcaatggtggctcctcttatatct |
32924829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 2525083 - 2525169
Alignment:
| Q |
52 |
aggtgatgattgtattgccgttaatgggggatcctcttacatctatgctactcgtgttgcatgtggtccaggccatggaataaggtt |
138 |
Q |
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| T |
2525083 |
aggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggtt |
2525169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 11658557 - 11658443
Alignment:
| Q |
24 |
tataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctactcgtgttgcatgtggtccagg |
123 |
Q |
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| T |
11658557 |
tataaaatgagttgactttcgtataaacaggtgatgattgtattgccgtcaaagaaggttcctcttacatcagcgctactcgtattgcttgtggactagg |
11658458 |
T |
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| Q |
124 |
ccatggaataaggtt |
138 |
Q |
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| T |
11658457 |
tcatgggataaggtt |
11658443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 2550053 - 2550152
Alignment:
| Q |
39 |
ttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctactcgtgttgcatgtggtccaggccatggaataaggtt |
138 |
Q |
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| T |
2550053 |
ttttcttttaaataggtgacgattgtattgcagtaaatggtggctccacttttatcaatgctactcgggttacttgtggaccaggccatgggataaggtt |
2550152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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