View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20979_low_4 (Length: 370)
Name: NF20979_low_4
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 48653806 - 48653605
Alignment:
| Q |
1 |
gtctgattatggtctattctactctgacctagacaagatgatgcattcgggtgagttaatgtattccattccatcaccaccactttttgaggattatcag |
100 |
Q |
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| T |
48653806 |
gtctgattatggtctattgtactctgacctagacaagatgatgcattcgggtgagttaatgtattccattccaccaccaccactttttgaggattatcag |
48653707 |
T |
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| Q |
101 |
aacttatcatccgttgaagaatatgatgatgataatgacgatcctttttctcatcaatcattcctttggaactggaatttctgattcttgatcatatata |
200 |
Q |
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| T |
48653706 |
aacttatcatcagttgaagaatatgatgatgataatggcgatcctttttctcatcaatcattcctttggaactggaatttctgattcttgatcatatata |
48653607 |
T |
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| Q |
201 |
ta |
202 |
Q |
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|| |
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| T |
48653606 |
ta |
48653605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 48653569 - 48653410
Alignment:
| Q |
194 |
atatatatacttttgcatgctaaattttacttttaactatttacagcctctctctgatt-------ggtataatttgttttttgctaccatattctatat |
286 |
Q |
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| T |
48653569 |
atatatatacttttgcatgctaaattttacttttaactatttacagcctctctctgattagtgattggtataatttgttttttgctaccatattgtatat |
48653470 |
T |
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| Q |
287 |
ggttgtttgtttcttaataacaataacaatatcaaggacaggttggtcatacatatatac |
346 |
Q |
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| T |
48653469 |
ggttgtttgtttcttaataacaataacaatatcaaggacaggttggtcatacatatatac |
48653410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 48645292 - 48645241
Alignment:
| Q |
123 |
atgatgatgataatgacgatcctttttctcatcaatcattcctttggaactggaa |
177 |
Q |
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| T |
48645292 |
atgatgatgataatgac---ccattttcccatcaatcattcctttggaactggaa |
48645241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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