View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20979_low_5 (Length: 329)
Name: NF20979_low_5
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_low_5 |
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| [»] scaffold0068 (3 HSPs) |
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Alignment Details
Target: scaffold0068 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 30148 - 30042
Alignment:
| Q |
68 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcctacgtagttagagtttaaagcaagaaaacttgttgtggcaaata |
167 |
Q |
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| T |
30148 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcagagtttaaagcaagaaaacttgctgcggcaaata |
30049 |
T |
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| Q |
168 |
tgtgctg |
174 |
Q |
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| T |
30048 |
tatgctg |
30042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 29965 - 29861
Alignment:
| Q |
201 |
cacaattgtattgaattctcacattgttgaatgtatttagaattgagatctaagaaatggatgcatgttttctaatccattgtgcaatgtattcacggta |
300 |
Q |
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| T |
29965 |
cacaattgtattgaattctcacattgtccaatgtatttagaatttgaatctaagaaatggatgcatcttttctaatccattgtgcaatgtattcacggga |
29866 |
T |
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| Q |
301 |
gattt |
305 |
Q |
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| T |
29865 |
gattt |
29861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 26972 - 26898
Alignment:
| Q |
22 |
ttttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatca |
97 |
Q |
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| T |
26972 |
ttttacttgatttgt-tagtatgtgcatttgaaccactctagtttcactatatcaataatgtacataacttcatca |
26898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 21683762 - 21683868
Alignment:
| Q |
68 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcctacgtagttagagtttaaagcaagaaaacttgttgtggcaaata |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| || |||||||| |
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| T |
21683762 |
actatatcaataatgtacgtaacttcatcatggtagtgttaaaacctactaaatcatacatagtcagagtttaaagcaagaaaacttgctgcggcaaata |
21683861 |
T |
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| Q |
168 |
tgtgctg |
174 |
Q |
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| T |
21683862 |
tatgctg |
21683868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 21683945 - 21684049
Alignment:
| Q |
201 |
cacaattgtattgaattctcacattgttgaatgtatttagaattgagatctaagaaatggatgcatgttttctaatccattgtgcaatgtattcacggta |
300 |
Q |
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| T |
21683945 |
cacaattgtattgaattctcacattgtccaatgtatttagaatttgaatctaagaaatggatgcatcttttctaatccattgtgcaatgtattcacggga |
21684044 |
T |
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| Q |
301 |
gattt |
305 |
Q |
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||||| |
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| T |
21684045 |
gattt |
21684049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 42727119 - 42727214
Alignment:
| Q |
22 |
ttttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatcatggtagtgttaaaacctacta |
118 |
Q |
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| T |
42727119 |
ttttacttgatttgt-tagtatgtgcatttgaaccactatagtttcactatatcaataatgtacgtaacttcatcatggtagtgttaaaacctacta |
42727214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 21686938 - 21687012
Alignment:
| Q |
22 |
ttttacttgatttgtatagtatgtgcatttgaacttctctagtttcactatatcaataatgtacgtaacttcatca |
97 |
Q |
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| T |
21686938 |
ttttacttgatttgt-tagtatgtgcatttgaaccactctagtttcactatatcaataatgtacataacttcatca |
21687012 |
T |
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