View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20979_low_6 (Length: 327)
Name: NF20979_low_6
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_low_6 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0046 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 25431033 - 25431359
Alignment:
| Q |
1 |
tcatcatcaactaatcctcctcccaatactatagtattttcaggaagcatccagaaacatcctttggacacggttacattagagaatttgccctacaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25431033 |
tcatcatcaactaatcctcctcccaatactatagtattttcaggaagcatccggaaacatcctttggacacggttacattagagaatttgacctacaagt |
25431132 |
T |
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| Q |
101 |
agcaatagatccctgtaagtccaataaaaatatatatgtatgtatgtatgtattcagatgacatggaagaaacctttaatccaagaggcgcagaagaagg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25431133 |
agcaatagatccctgtaagtccaataagaatatatatatatatatgtatgtattcagatgacatggaagaaacctttaatccaagaggcgcagaagaagg |
25431232 |
T |
|
| Q |
201 |
ttgaatgtcttcaataggcctgaagtagttctctactccaaagactttattaacaccatcggtcattgacaacgtcaacatcctacctttccgtggagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25431233 |
ttgaatgtcttcaataggcctgaagtagttctctactccaaagactttattaacaccatcggtcattgacaacgtcaacatcctacctttccgtggagca |
25431332 |
T |
|
| Q |
301 |
acaagattcgaaaattcatcgacctgc |
327 |
Q |
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| T |
25431333 |
atgagattcgtaaattcatcgacctgc |
25431359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 24969670 - 24969338
Alignment:
| Q |
1 |
tcatcatcaactaatcctcctcccaatactatagtattttcaggaagcatccagaaacatcctttggacacggttacattagagaatttgccctacaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
24969670 |
tcatcatcaactaatcctcctcccaatactatagtattttcaggaagcatccagaaacatcctttggacacggttacattagagaatttgacctgcaagt |
24969571 |
T |
|
| Q |
101 |
agcaatagatccctgtaagtccaataaaaatatatatgtatgtat------gtatgtattcagatgacatggaagaaacctttaatccaagaggcgcaga |
194 |
Q |
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| T |
24969570 |
agcaatagatccctgtaagtccaataagaatatatatatatatatatatatgtatgtattcagatgacatggaagaaacctttaatccaagaggcgcaga |
24969471 |
T |
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| Q |
195 |
agaaggttgaatgtcttcaataggcctgaagtagttctctactccaaagactttattaacaccatcggtcattgacaacgtcaacatcctacctttccgt |
294 |
Q |
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| T |
24969470 |
agaaggttgaatgtcttcaataggcctgaagtagttctctactccaaagactttattaacaccatcggtcattgacaacgtcaacatcctacctttccgt |
24969371 |
T |
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| Q |
295 |
ggagcaacaagattcgaaaattcatcgacctgc |
327 |
Q |
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| T |
24969370 |
ggagcaatgagattcgtaaattcatcgacctgc |
24969338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 30097485 - 30097379
Alignment:
| Q |
1 |
tcatcatcaactaatcctcctcccaatactatagtattttcaggaagcatccagaaacatcctttggacacggttacattagagaatttgccctacaagt |
100 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
30097485 |
tcatcatcagctaatcctccccccaatactatagtattttcaggaagcagcgagaaaattcctttggacacgcttacattagagaatttgacctacaagt |
30097386 |
T |
|
| Q |
101 |
agcaata |
107 |
Q |
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||||||| |
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| T |
30097385 |
agcaata |
30097379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 163 - 298
Target Start/End: Complemental strand, 30097284 - 30097152
Alignment:
| Q |
163 |
atggaagaaacctttaatccaagaggcgcagaagaaggttgaatgtcttcaataggcctgaagtagttctctactccaaagactttattaacaccatcgg |
262 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| || |||||||||| |||| |||||| |||| |||||||| ||||||||||| |
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| T |
30097284 |
atggaagaaacctttaatccaagaggcgcagaag---gttgaatgcctcgaataggcctgcggtaggtctctattccatagactttacgaacaccatcgg |
30097188 |
T |
|
| Q |
263 |
tcattgacaacgtcaacatcctacctttccgtggag |
298 |
Q |
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||||||||||| ||| |||| |||| | |||||||| |
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| T |
30097187 |
tcattgacaacatcaccatcgtaccatcccgtggag |
30097152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 20013143 - 20013171
Alignment:
| Q |
1 |
tcatcatcaactaatcctcctcccaatac |
29 |
Q |
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| T |
20013143 |
tcatcatcaactaatcctcctcccaatac |
20013171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 298
Target Start/End: Original strand, 87516 - 87668
Alignment:
| Q |
144 |
atgtatgtattcagatgacatggaagaa-acctttaatccaagaggcgcagaagaaggttgaatgtcttcaataggcctgaagtagttctctactccaaa |
242 |
Q |
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|||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||| || ||||||||| |||| |||||| |||| | |
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| T |
87516 |
atgtatgtattcagatgaaaaggaatttgacctttaatccaagaggcg---aagaaggttgaatggctagaataggcctccggtaggtctctattccata |
87612 |
T |
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| Q |
243 |
gactttattaacaccatcggtcattgacaacgtcaacatcctacctttccgtggag |
298 |
Q |
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|| |||| |||||||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
87613 |
gattttacgaacaccatcggtcattgacaacatcaacatcctaccatcccgtggag |
87668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 87355 - 87479
Alignment:
| Q |
1 |
tcatcatcaactaatcctcctccc---aatactatagtattttcaggaagcatccagaaacatcctttggacacggttacattagagaatttgccctaca |
97 |
Q |
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|||||||||||||||||||||||| |||||| | |||||||| |||||| | ||||| |||| || | | ||||||||| ||||||| |||||| |
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| T |
87355 |
tcatcatcaactaatcctcctccccccaatacttcaatattttcacgaagcagcaagaaaattcctgtgtgcgcacttacattagtgaatttgacctaca |
87454 |
T |
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| Q |
98 |
agtagcaatagatccctgtaagtcca |
123 |
Q |
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||||||||||||||||| |||||||| |
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| T |
87455 |
agtagcaatagatccct-taagtcca |
87479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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