View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20979_low_7 (Length: 316)
Name: NF20979_low_7
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 32869490 - 32869205
Alignment:
| Q |
14 |
gagtgaccaaaaacaaaaatgtaccatgtaaatggaattccaatgtattgttaggaacgaactcataagcaagtagcctctgagaaccagtgctgcagta |
113 |
Q |
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| T |
32869490 |
gagtgaccaaaaacaaaaatgtaccatgtaaatggaattccaatgttttgttaggaacaaattcataagcaagtagcatctcataaccagcgctgcagta |
32869391 |
T |
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| Q |
114 |
tccaacaagagagacaagatgtctgtgatgaacacggctaataatcccaacttcagcttgaaattcgcgttctccttgtccactaccagctttcagctgc |
213 |
Q |
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| T |
32869390 |
tccaacaagagagacaagatgtttgtgatgaacacggctaataatctcaacttcagctttaaattcgctttctccttgactgctatcagctttcagctgc |
32869291 |
T |
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| Q |
214 |
ttaacagcaacctctttaccatcagagagaatacctttgtgtacagatccaaatcccccttgtcctaggaagttagcatcagagaa |
299 |
Q |
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| T |
32869290 |
ttaacagcaatctctttaccatcagggagaatacctttgtgtacagatccaaatcccccttttcctaggtagttagcatcagagaa |
32869205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 316
Target Start/End: Complemental strand, 32902957 - 32902670
Alignment:
| Q |
29 |
aaaatgtaccatgtaaatggaattccaatgtattgttaggaacgaactcataagcaagtagcctctgagaaccagtgctgcagtatccaacaagagagac |
128 |
Q |
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| T |
32902957 |
aaaatgtaccatgtaaatggaattccagagtattgttaggaacaaattcgtaaacaagaagtctctgaaacccagtgctgcagtatccaacaagagaaac |
32902858 |
T |
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| Q |
129 |
aagatgtctgtgatgaacacggctaataatcccaacttcagcttgaaattcgcgttctccttgtccactaccagctttcagctgcttaacagcaacctct |
228 |
Q |
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| T |
32902857 |
aagatgtttatgatgaacacggctaataatctcaacttcagcttgaaattcgcgttctccttgtccgctaccagctttcagctgcttaacagcaacctct |
32902758 |
T |
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| Q |
229 |
ttaccatcagagagaatacctttgtgtacagatccaaatcccccttgtcctaggaagttagcatcagagaaaccgtcggctgcacgcg |
316 |
Q |
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| T |
32902757 |
ttaccattagggagaatacctctatgcacatatccaaatccaccttgaccgaggaggttagcatcagagaaaccgtcggttgcacgcg |
32902670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 33145719 - 33145813
Alignment:
| Q |
112 |
tatccaacaagagagacaagatgtctgtgatgaacacggctaataatcccaacttcagcttgaaattcgcgttctccttgtccactaccagcttt |
206 |
Q |
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| T |
33145719 |
tatccaacaagcgacacaagatgacgatgatgaacacgactaatgatatcaatctcagcttgaaactcacgttcgccttgtccactacccgcttt |
33145813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 7563856 - 7563768
Alignment:
| Q |
112 |
tatccaacaagagagacaagatgtctgtgatgaacacggctaataatcccaacttcagcttgaaattcgcgttctccttgtccactacc |
200 |
Q |
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| T |
7563856 |
tatccaacaagtgaaacaagatgacgatgatgaacacgactaatgatgtcaatctcagcttggaactcccgttctccttgtccgctacc |
7563768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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