View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20979_low_8 (Length: 251)
Name: NF20979_low_8
Description: NF20979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20979_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 27246070 - 27245852
Alignment:
| Q |
1 |
gctctttgcactcctcaaattacggcactgtctatcaatatttgattagataatgatgataagaaagaaattgtcaaaccatcaccaccaaaaatcaaac |
100 |
Q |
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| T |
27246070 |
gctctttgcactcctcaaagaacggccctgcctatcaatatttgattagataatgatgataagaaagaatttgtcaaaccatcaccaccaaaaatcaaac |
27245971 |
T |
|
| Q |
101 |
gttaaaatcttttgaacctctaacttctgagaaataagcctaaaaggttaaaaaagaagcaagagtcaagaagaactaggaaatcatggctattgctagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27245970 |
gttaaaatcttttgaacctctaacttctgagaaataagcctaaaaggttaaaaaagaagcaagagtcaagaagaactaggaaatcatggctattgctagc |
27245871 |
T |
|
| Q |
201 |
caaatgttatatggttttg |
219 |
Q |
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||||||||||||||||||| |
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| T |
27245870 |
caaatgttatatggttttg |
27245852 |
T |
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