View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_11 (Length: 422)
Name: NF2097_high_11
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 24223910 - 24224302
Alignment:
| Q |
14 |
agggaaattatatatatgtgaagtggggtacatactaaggcctgcttttcatccttacattattgtaaacgaatggcatgaaaggagaatgcaacttcct |
113 |
Q |
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| T |
24223910 |
agggaaattatatatatgtgaagtggggtacatactaaggcctgcttttcatccttacattattgtaaacgaatggcatgaaaggagaatgcaacttcct |
24224009 |
T |
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| Q |
114 |
atagtacttgagacaaattaaaagacaaaaatataagttataaggaatgaaaaactgggtcatggtattgagaacaaaattttgtctctttgcttcttgg |
213 |
Q |
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| T |
24224010 |
atagtacttgagacaaattaaaagacaaaaatataagttataaggaatgaaaaactgggtcatggtattgagaacaaaattttgtctctttgcttcttgg |
24224109 |
T |
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| Q |
214 |
cgtgtacttctttgcctacgttagcttcaaatgatatattgtctcatagacacacaatgttattatcagaaattttattaatattataattaataatagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
24224110 |
cgtgtacttctttgcctacgttagcttcaaatgatatattgtctcatagacacacaatgttattatcagaaattttattaatattata--taataatatt |
24224207 |
T |
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| Q |
314 |
tgataacaatatgtttttgtgtaatttatacagtatgctaatatattatctccaccgaatttgtctcttctaaatgagctttcacttcatataat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224208 |
tgataacaatatgtttttgtgtaatttatacagtatgctaatatattatctccaccgaatttgtctcttctaaatgagctttcacttcatataat |
24224302 |
T |
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