View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_13 (Length: 415)
Name: NF2097_high_13
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 934736 - 934349
Alignment:
| Q |
19 |
gtaaggcagcatgggttgctacaagtgcaagctgcaatacaacatatacacacatcatatttagcatttatttatgaaataataaaaaggaactaaaata |
118 |
Q |
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| T |
934736 |
gtaaggcagcatgggttgctacaagtgcaagctgcaatacaacatatacacacatcatatttagcatttatttatgaaataataaaaatgaactaaaata |
934637 |
T |
|
| Q |
119 |
ttaggcacatgctagaatagtttggatattgttg---cttacattgagtatgataaagatggataaatgacgaaattccataatggaaattgatgaacta |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
934636 |
ttaggcacatgctagaatagtttggatattgttgttgcttacattgagtacgataaagatggataaatgacgaaattccatagtggaaattgatgaacta |
934537 |
T |
|
| Q |
216 |
gagctccaactaaatgatagtaattgaaaataaggattgatgaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttataggaa |
315 |
Q |
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|||||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
934536 |
gagctccaactaaatggtagtaattgaagataaagattgaggaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttataggaa |
934437 |
T |
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| Q |
316 |
gggaatagttt-tagatatttgtcggttgtatgcttgaatttcaactggctaccaaatttgacacacttttaataacttcaactgcct |
402 |
Q |
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| T |
934436 |
gggaatagtttctagatatttgtcggttgtatgcttgaatttcaactggctaccaaatttgacacacttttaataacttcaactgcct |
934349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 900830 - 900775
Alignment:
| Q |
257 |
gaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttatag |
312 |
Q |
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| T |
900830 |
gaactgaaaacaagatagaatgaagatccctaagtggccttacacatcatttatag |
900775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 901059 - 901015
Alignment:
| Q |
19 |
gtaaggcagcatgggttgctacaagtgcaagctgcaatacaacat |
63 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
901059 |
gtaatgcagcatgggttgctacaagtgcaagctgcaatacaacat |
901015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 915456 - 915410
Alignment:
| Q |
19 |
gtaaggcagcatgggttgctacaagtgcaagctgcaatacaacatat |
65 |
Q |
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| T |
915456 |
gtaaggcagcatgggttgccaccagtgcaagctgcaatacaacatat |
915410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 923515 - 923471
Alignment:
| Q |
19 |
gtaaggcagcatgggttgctacaagtgcaagctgcaatacaacat |
63 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
923515 |
gtaaggcagcatgagttgccacaagtgcaagctgcaatacaacat |
923471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 908921 - 908877
Alignment:
| Q |
19 |
gtaaggcagcatgggttgctacaagtgcaagctgcaatacaacat |
63 |
Q |
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|||||| |||||||||||| || |||||||||||||||||||||| |
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| T |
908921 |
gtaaggtagcatgggttgccaccagtgcaagctgcaatacaacat |
908877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 908665 - 908606
Alignment:
| Q |
252 |
ttgatgaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttata |
311 |
Q |
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|||| |||||| ||||||||||||||||||| || ||| ||| || |||||||||||||| |
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| T |
908665 |
ttgaggaactgtaagcaagatagaatgaagacccgtaactggactcacacaccatttata |
908606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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