View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_17 (Length: 360)
Name: NF2097_high_17
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_17 |
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| [»] scaffold0754 (2 HSPs) |
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Alignment Details
Target: scaffold0754 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0754
Description:
Target: scaffold0754; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 203 - 351
Target Start/End: Complemental strand, 5516 - 5368
Alignment:
| Q |
203 |
acgaccacgtgcttgtactttaaatctatcaactaaaaactctcttaaagatgacacttgaatcctagattgatctatcgagtctatttgttggttgaaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5516 |
acgaccacgtgcttgtactttaaatctatcaactaaaaactctcttaaggatgacacttgaattctagattgatctatcgagtctatttgttggttgaaa |
5417 |
T |
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| Q |
303 |
cattttcaaatcaatatgttgcatgaaaaatatcaacaccacttccttt |
351 |
Q |
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| T |
5416 |
cattttcaaatcaatatgttgcatgaaaaatatcaacaccacttccttt |
5368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0754; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 5718 - 5606
Alignment:
| Q |
1 |
tcatttccgttcgacaaaactactcctactaaaaacatctgtgtcctcgtatgctactcttaccggcaacattgaatgagcgatgtatgaaacttcactt |
100 |
Q |
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||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5718 |
tcatttccgttcgacaaaactacacctactagaaacatatgtgtcctcgtatgttactcttattggcaacattgaatgagcgatgtatgaaacttcactt |
5619 |
T |
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| Q |
101 |
agattaatatata |
113 |
Q |
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||||||||||||| |
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| T |
5618 |
agattaatatata |
5606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 22221797 - 22221945
Alignment:
| Q |
203 |
acgaccacgtgcttgtactttaaatctatcaactaaaaactctcttaaagatgacacttgaatcctagattgatctatcgagtctatttgttggttgaaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22221797 |
acgaccacgtgcttgtactttaaatctatcaactaaaaactctcttaaggatgacacttgaattctagattgatctatcgagtctatttgttggttgaaa |
22221896 |
T |
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| Q |
303 |
cattttcaaatcaatatgttgcatgaaaaatatcaacaccacttccttt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22221897 |
cattttcaaatcaatatgttgcatgaaaaatatcaacaccacttccttt |
22221945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 22221595 - 22221707
Alignment:
| Q |
1 |
tcatttccgttcgacaaaactactcctactaaaaacatctgtgtcctcgtatgctactcttaccggcaacattgaatgagcgatgtatgaaacttcactt |
100 |
Q |
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||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22221595 |
tcatttccgttcgacaaaactacacctactagaaacatatgtgtcctcgtatgttactcttattggcaacattgaatgagcgatgtatgaaacttcactt |
22221694 |
T |
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| Q |
101 |
agattaatatata |
113 |
Q |
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||||||||||||| |
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| T |
22221695 |
agattaatatata |
22221707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 5775871 - 5775818
Alignment:
| Q |
227 |
tctatcaactaaaaactctcttaaagatgacacttgaatcctagattgatctatc |
281 |
Q |
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|||||||||||| || |||||||| ||||| ||| |||||||||||||||||||| |
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| T |
5775871 |
tctatcaactaagaa-tctcttaaggatgaaactcgaatcctagattgatctatc |
5775818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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