View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_18 (Length: 358)
Name: NF2097_high_18
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 779520 - 779188
Alignment:
| Q |
9 |
gaagaaaatcagattaatgcatgtaatctctacaaatttcgtaaggagacaagataaaattgataacgtgaaacttacctttcaacttgtgcattttatc |
108 |
Q |
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| T |
779520 |
gaagaaaatgagattaatgcgtgtgctctctacaaatttcgtaaggagacatgataaaattgataacgtgaaacttacctttcaacctgtgcattttatc |
779421 |
T |
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| Q |
109 |
acactccgacttacatcccattcaacatcagtgtgaaacgtcgcaacatggtagcaaatagtgtagcatttttctgaatccaaccttgaacacctatata |
208 |
Q |
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| T |
779420 |
acactccgacttacatcccattcaacatcagtgtgaaacgtcgcaacatggtagcaaatagtgtagcatttttctgaatccaaccttgaacacctatata |
779321 |
T |
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| Q |
209 |
aggcacgccaacaacaacaatgcaaaaaattttgttagacattgtattttattggcttaaatgcaattttgctcctctcatattatttaaatttgggaaa |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
779320 |
aggcacgccaacaacaacaatgcaaacaattttgttagacattgtattttattggcttaaatgcaattttgctcctctcatattatttaaatttgggaaa |
779221 |
T |
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| Q |
309 |
tgttaacaagtgtgtctggtgcactctctaagg |
341 |
Q |
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|||||||||||||| | |||||||||||||||| |
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| T |
779220 |
tgttaacaagtgtgcccggtgcactctctaagg |
779188 |
T |
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