View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_25 (Length: 327)
Name: NF2097_high_25
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 23258077 - 23258376
Alignment:
| Q |
19 |
tatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagttgacatgtc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23258077 |
tatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccgaattcggagttgacatgtc |
23258176 |
T |
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| Q |
119 |
atacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23258177 |
atacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaaga |
23258276 |
T |
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| Q |
219 |
ggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23258277 |
ggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataa |
23258376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 318
Target Start/End: Original strand, 23247696 - 23247986
Alignment:
| Q |
26 |
cgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagttgacatgtcatacgaa |
125 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||| |||||||| | ||||| || ||||| || ||| | ||| ||| | | | |
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| T |
23247696 |
cgggtggcgagtttccttaaatatcttcctccctgctcgcttcttcgggttacttgatgctaaccgcacctcagaacccggtgatgatgcgtcgaaggga |
23247795 |
T |
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| Q |
126 |
gaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaagaggaaaag |
225 |
Q |
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| T |
23247796 |
gaaaaatcttttgaggaaatggagtgtgaataggaagagttgttagtactaatcatatgtatgtgttggatagagtggaaaatggttttgagaggtaaag |
23247895 |
T |
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| Q |
226 |
tggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataa |
318 |
Q |
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||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
23247896 |
tgggaattg--gagagagtttgttttaagagaatgaagagtaaggtgtgttatatatatagggaagcattgttgtgtttgaaggaaagaataa |
23247986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 136 - 318
Target Start/End: Original strand, 23252218 - 23252398
Alignment:
| Q |
136 |
ttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaagaggaaaagtggcaattgg |
235 |
Q |
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|||||| |||||| |||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||| ||||| ||||| ||||||| |||||| |
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| T |
23252218 |
ttgaggaaatggagtgtgaataggaagagttgttagtacttatcatatgtatgtgttggatagagtggaaaatggttttgagaggtaaagtggtaattgg |
23252317 |
T |
|
| Q |
236 |
agagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataa |
318 |
Q |
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| T |
23252318 |
agagag--tttgttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgtgtttgaaggaaagaataa |
23252398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 23266632 - 23266812
Alignment:
| Q |
19 |
tatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagttgacatgtc |
118 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||| |||| | | ||| ||| | | |
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| T |
23266632 |
tatacaccgggtggcgagtttccttgaatatcttcctccctgctctcttcttcgggttactagctgctaatcgtatctccgattccggtaatgagttata |
23266731 |
T |
|
| Q |
119 |
atacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
199 |
Q |
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|| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23266732 |
gtaggaagaagatgcttctgaggaaatggagtgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
23266812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 23266804 - 23266890
Alignment:
| Q |
232 |
ttggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataa |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||| |
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| T |
23266804 |
ttggagagatagttgtttttaagagaatgaagagtaaggtgtgttacatatatagtgaagcatacttggttttgaaggaaagaataa |
23266890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 23587227 - 23587291
Alignment:
| Q |
27 |
gggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcg |
91 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||||||| ||| || | ||||||||||| |
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| T |
23587227 |
gggtggcgagtttccttgaacttcttcctccctgcacgcttcttcggggtagttgccgctaatcg |
23587291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 23583342 - 23583390
Alignment:
| Q |
26 |
cgggtggcgagtttccttgaagatcttcctccctgctcgcttctttggg |
74 |
Q |
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|||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
23583342 |
cgggtggcgagtctccttgaacttcttcctccctgcacgcttctttggg |
23583390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 23391539 - 23391586
Alignment:
| Q |
26 |
cgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgg |
73 |
Q |
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|||||||||||| |||||||| ||||||||||||| ||||||||||| |
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| T |
23391539 |
cgggtggcgagtctccttgaacttcttcctccctgcacgcttctttgg |
23391586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 23507073 - 23507124
Alignment:
| Q |
19 |
tatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctt |
70 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| | |||||||| |
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| T |
23507073 |
tatacaccgggtggcgagtttccttgaatttcttcctccctccacgcttctt |
23507124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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