View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_26 (Length: 327)
Name: NF2097_high_26
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_26 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 34136715 - 34137036
Alignment:
| Q |
6 |
actagtgacactttaaattcaattcagtatagcttaaacttaaaagcattgacaatcaactatctaaagtaaaatactaaaattgtttgaattttaatcc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34136715 |
actagtgacactttaaattcaattcagtatagcttaaacttaaaagcattgacaatcaactatctaaagtaaaatactaaaattgtttgaattttaatcc |
34136814 |
T |
|
| Q |
106 |
aaaaattgttctttatgtttgactcaaaatttactcaaggtcatattcatctagtcaaaacagacacaaagtagcaaactctatttatataccaggatgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34136815 |
aaaaattgttctttatgtttgactcaaaatttactcaaggtcatattcatctagtcaaaacagacacaaagtagcaaactctatttatataccaggatgt |
34136914 |
T |
|
| Q |
206 |
cttattatataagaaaaaccaaaccatacttctaactataaaattttgatcgattagtcattccaataacc-----attttaactcaccaaggataacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34136915 |
cttattatataagaaaaaccaaaccatacttctaactataaaattttgatcgattagtcattccaataaccattatattttaactcaccaaggataacta |
34137014 |
T |
|
| Q |
301 |
gaacaatggactaatattattc |
322 |
Q |
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||||||||||||||| |||||| |
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| T |
34137015 |
gaacaatggactaattttattc |
34137036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 34128108 - 34128415
Alignment:
| Q |
6 |
actagtgacactttaaattcaattcagtatagcttaaacttaaaagcattgacaatcaactatctaaagtaaaatactaaaattgtttgaattttaatcc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34128108 |
actagtgacactttaaattcaattcagtatagcttaaacttaaaagcattgacaatcaactatctaaagtaaaatactaaaattgtttgaattttaatcc |
34128207 |
T |
|
| Q |
106 |
aaaaattgttctttatgtttgactcaaaatttactcaaggtcatattcatctagtcaaaacagacacaaagtagcaaactctatttatataccaggatgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34128208 |
aaaaattgttctttatgtttgactcaaaatttactca------------tctagtcaaaacagacacaaagtagcaaactctatttatataccaggatgt |
34128295 |
T |
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| Q |
206 |
cttattatataagaaaaaccaaaccatactt---ctaactataaaattttgatcgattagtcattccaataaccattttaactcaccaaggataactaga |
302 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34128296 |
cttattatataagaaaaacaaaaccatacttgttctaactataaaattttgatcgattagtcattccaataaccattttaactcaccaaggataactaga |
34128395 |
T |
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| Q |
303 |
acaatggactaatattattc |
322 |
Q |
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||||||||||||| |||||| |
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| T |
34128396 |
acaatggactaattttattc |
34128415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 3509336 - 3509299
Alignment:
| Q |
127 |
actcaaaatttactcaaggtcatattcatctagtcaaa |
164 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
3509336 |
actcaaaatttactcaaggttatattcatctagtcaaa |
3509299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 2187417 - 2187349
Alignment:
| Q |
254 |
atcgattagtcattccaataaccattttaactcaccaaggataactagaacaatggactaatattattc |
322 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
2187417 |
atcgattaatcattccaataaccattttaactcaccaaagataactagaataatggactaattttattc |
2187349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 16421155 - 16421118
Alignment:
| Q |
127 |
actcaaaatttactcaaggtcatattcatctagtcaaa |
164 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
16421155 |
actcaaaatttactcaaggttatattcatctagtcaaa |
16421118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 9867 - 9830
Alignment:
| Q |
127 |
actcaaaatttactcaaggtcatattcatctagtcaaa |
164 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
9867 |
actcaaaatttactcaaggttatattcatctagtcaaa |
9830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 5537612 - 5537649
Alignment:
| Q |
127 |
actcaaaatttactcaaggtcatattcatctagtcaaa |
164 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
5537612 |
actcaaaatttactcaaggttatattcatctagtcaaa |
5537649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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