View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_35 (Length: 281)
Name: NF2097_high_35
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 30348136 - 30348398
Alignment:
| Q |
20 |
attttgttattagatttgccaagggtttattcttatgatgtttcttgttttagatgaaatgtatttttggtgaatgttagatgaaattgatatgctagtc |
119 |
Q |
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| T |
30348136 |
attttgttattagatttgccaagggtttattcttatgatgtttcttgttttagatgaaatgtatttttggtgaatgttagatgaaattgatatgctagtc |
30348235 |
T |
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| Q |
120 |
ttgaactaaataactaaataaatagattgcggtcatgttttttactcatgcttttgtaatggttaatctaatattttatttttagactcatgatttg--- |
216 |
Q |
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| T |
30348236 |
ttg--------aactaaataaatagattgcggtcatgttttttactcatgcttttgtaatggttaatctaatattttatttttagactcatgatttgttt |
30348327 |
T |
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| Q |
217 |
------tttatcaaatcttattcaattcaacgatttagggttttaattagcaaaatctctactatttcgac |
281 |
Q |
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| T |
30348328 |
atcaaatttatcaaatcttattccattcaacgatttagggttttaattaacaaaatctctactatttcgac |
30348398 |
T |
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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 13209843 - 13209951
Alignment:
| Q |
63 |
cttgttttagatgaaatgtatttttggtgaatgttagatgaaattgatatgctagtcttgaactaaataactaaataaatagattgcggtcatgtttttt |
162 |
Q |
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| T |
13209843 |
cttgttttagatgaagtgtatatttggtgaatgttaggtgaagttgttatgttagtattgaactaagtaactaaataaatagattatggtcatg-tcttt |
13209941 |
T |
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| Q |
163 |
actcatgctt |
172 |
Q |
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| T |
13209942 |
actcatgctt |
13209951 |
T |
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