View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_36 (Length: 277)
Name: NF2097_high_36
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 24319684 - 24319816
Alignment:
| Q |
45 |
gtctataaatgccctgaaaacatccattctttttaagcacacactctatcaagtgggaaaaatacaccaacaaccacacatgatccatcctacatgtgtg |
144 |
Q |
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| T |
24319684 |
gtctataaatgcccagaaaacatccattctttttaagcacacactcaatcaagtggaaaaaatacaccaacaaccacacatgatccatcctacatgtgtg |
24319783 |
T |
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| Q |
145 |
cgtaaccttcatgattcctctgattatcaaaga |
177 |
Q |
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| T |
24319784 |
cgtaaccttcatgattcctctaattatcaaaga |
24319816 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 24319886 - 24319929
Alignment:
| Q |
152 |
ttcatgattcctctgattatcaaagatgactttacttgcaatat |
195 |
Q |
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| T |
24319886 |
ttcatgattcctctgattatcaaagatgaatttacttgcaatat |
24319929 |
T |
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