View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_high_42 (Length: 260)

Name: NF2097_high_42
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_high_42
NF2097_high_42
[»] chr2 (1 HSPs)
chr2 (6-221)||(37845581-37845796)
[»] chr8 (4 HSPs)
chr8 (29-84)||(35114000-35114055)
chr8 (29-75)||(8402283-8402329)
chr8 (29-75)||(39165054-39165100)
chr8 (29-67)||(31802858-31802896)
[»] chr1 (2 HSPs)
chr1 (29-73)||(32635214-32635258)
chr1 (32-73)||(32660907-32660948)
[»] chr4 (1 HSPs)
chr4 (29-85)||(6930628-6930685)
[»] chr3 (2 HSPs)
chr3 (32-81)||(49593994-49594043)
chr3 (29-81)||(45118717-45118769)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 37845581 - 37845796
Alignment:
Q  6 atgtagggccttgcacatcctatttattcaccttaagaggtgaatttatagctgctaggctacttgaccagaaaaataaataaatttgtttagtgatagg 105  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845581 atgtagggccccgcacatcctacttattcaccttaagaggtgaatttatagttgctaggctacttgaccagaaaaataaataaatttgtttagtgatagg 37845680  T
Q  106 atagcttagagttgttcaattttatctttaattatctaagcagaatgtacttgttcctggaatacttatgaacatttttgctctttatgttggacagtct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37845681 atagcttagagttgttcaattttatctttaattatctaagcagaatgtacttgttcctggaatacttatgaacatttttgctctttatgttggacagtct 37845780  T
Q  206 cttgcattggcacatt 221  Q
    ||||||||||||||||    
T  37845781 cttgcattggcacatt 37845796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 35114055 - 35114000
Alignment:
Q  29 ttattcaccttaagaggtgaatttatagctgctaggctacttgaccagaaaaataa 84  Q
    |||||||||||||  ||||||||||||||| ||||||| |||||||| ||||||||    
T  35114055 ttattcaccttaaagggtgaatttatagctactaggctgcttgaccaaaaaaataa 35114000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 8402329 - 8402283
Alignment:
Q  29 ttattcaccttaagaggtgaatttatagctgctaggctacttgacca 75  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||    
T  8402329 ttattcaccttaagaggtgaatttctagccactaggctacttgacca 8402283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 39165054 - 39165100
Alignment:
Q  29 ttattcaccttaagaggtgaatttatagctgctaggctacttgacca 75  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||    
T  39165054 ttattcaccttaagaggtgaatttctagccactaggctacttgacca 39165100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 31802896 - 31802858
Alignment:
Q  29 ttattcaccttaagaggtgaatttatagctgctaggcta 67  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  31802896 ttattcaccttaagaggtgaatttatagccactaggcta 31802858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 32635214 - 32635258
Alignment:
Q  29 ttattcaccttaagaggtgaatttatagctgctaggctacttgac 73  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||    
T  32635214 ttattcaccttaagaggtgaatttctagccactaggctacttgac 32635258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 32660907 - 32660948
Alignment:
Q  32 ttcaccttaagaggtgaatttatagctgctaggctacttgac 73  Q
    ||||||||||||||||||||| ||||  ||||||||||||||    
T  32660907 ttcaccttaagaggtgaatttctagccactaggctacttgac 32660948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 6930628 - 6930685
Alignment:
Q  29 ttattcacctt-aagaggtgaatttatagctgctaggctacttgaccagaaaaataaa 85  Q
    ||||||||||| ||||||||||| | ||| | |||||||||||||||| |||||||||    
T  6930628 ttattcacctttaagaggtgaatatctagttactaggctacttgaccaaaaaaataaa 6930685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 49593994 - 49594043
Alignment:
Q  32 ttcaccttaagaggtgaatttatagctgctaggctacttgaccagaaaaa 81  Q
    ||||||||||||||||||||| ||| | || ||||||||||||| |||||    
T  49593994 ttcaccttaagaggtgaatttctagttactcggctacttgaccaaaaaaa 49594043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 45118717 - 45118769
Alignment:
Q  29 ttattcaccttaagaggtgaatttatagctgctaggctacttgaccagaaaaa 81  Q
    |||||||| ||||||||||||||| ||||  |||||||||| ||||| |||||    
T  45118717 ttattcactttaagaggtgaatttctagccactaggctactcgaccaaaaaaa 45118769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University