View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_high_44 (Length: 257)

Name: NF2097_high_44
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_high_44
NF2097_high_44
[»] chr7 (22 HSPs)
chr7 (1-257)||(31303480-31303736)
chr7 (80-257)||(21589650-21589828)
chr7 (72-257)||(4290854-4291039)
chr7 (72-257)||(28804883-28805071)
chr7 (111-257)||(18312853-18313000)
chr7 (119-257)||(21548479-21548618)
chr7 (107-257)||(5083724-5083873)
chr7 (107-220)||(15958244-15958358)
chr7 (114-257)||(20556793-20556940)
chr7 (82-180)||(32964855-32964954)
chr7 (162-257)||(22740646-22740741)
chr7 (76-177)||(28805125-28805227)
chr7 (76-198)||(32964658-32964779)
chr7 (194-257)||(46943761-46943826)
chr7 (76-180)||(31303358-31303463)
chr7 (153-240)||(5174910-5174998)
chr7 (91-167)||(22032981-22033056)
chr7 (91-198)||(22033147-22033253)
chr7 (122-178)||(15958416-15958472)
chr7 (132-229)||(27523442-27523541)
chr7 (122-180)||(5083890-5083949)
chr7 (122-180)||(20556717-20556776)
[»] chr1 (27 HSPs)
chr1 (72-257)||(29676982-29677167)
chr1 (72-255)||(34364260-34364443)
chr1 (108-257)||(29167743-29167891)
chr1 (83-257)||(5831559-5831734)
chr1 (121-250)||(38951941-38952071)
chr1 (111-244)||(42604258-42604392)
chr1 (122-230)||(2569962-2570071)
chr1 (82-257)||(34490215-34490391)
chr1 (111-257)||(25238504-25238650)
chr1 (72-180)||(5855208-5855317)
chr1 (122-222)||(9929677-9929778)
chr1 (82-167)||(13350894-13350979)
chr1 (72-162)||(13351008-13351098)
chr1 (106-194)||(9929862-9929951)
chr1 (123-194)||(38244791-38244863)
chr1 (121-180)||(517512-517571)
chr1 (82-180)||(5855018-5855116)
chr1 (89-168)||(28499643-28499722)
chr1 (195-249)||(517433-517487)
chr1 (93-167)||(2995924-2995997)
chr1 (195-257)||(2996039-2996101)
chr1 (136-194)||(17227288-17227346)
chr1 (73-167)||(34490091-34490184)
chr1 (126-167)||(9468064-9468105)
chr1 (124-257)||(9468135-9468261)
chr1 (119-191)||(2569904-2569979)
chr1 (82-146)||(42604120-42604184)
[»] chr6 (34 HSPs)
chr6 (111-251)||(10304636-10304776)
chr6 (107-257)||(138646-138797)
chr6 (107-257)||(146667-146818)
chr6 (82-230)||(2430513-2430662)
chr6 (91-257)||(9068433-9068599)
chr6 (93-257)||(3222458-3222624)
chr6 (91-257)||(3620675-3620842)
chr6 (72-257)||(2834989-2835175)
chr6 (82-257)||(22608387-22608566)
chr6 (122-257)||(33814961-33815098)
chr6 (82-226)||(23595202-23595344)
chr6 (82-200)||(30056032-30056152)
chr6 (76-191)||(7706764-7706881)
chr6 (195-257)||(9474657-9474718)
chr6 (84-177)||(20084589-20084683)
chr6 (84-177)||(24386318-24386412)
chr6 (91-180)||(22608281-22608370)
chr6 (82-180)||(11108175-11108274)
chr6 (91-180)||(7915697-7915787)
chr6 (162-230)||(7706864-7706932)
chr6 (126-180)||(2365649-2365704)
chr6 (131-191)||(2430645-2430706)
chr6 (83-167)||(23595066-23595150)
chr6 (82-156)||(7915608-7915683)
chr6 (76-180)||(3222337-3222441)
chr6 (121-166)||(11108115-11108160)
chr6 (77-160)||(138813-138895)
chr6 (77-160)||(146834-146916)
chr6 (107-173)||(9068329-9068395)
chr6 (73-178)||(9474536-9474645)
chr6 (192-230)||(20084680-20084718)
chr6 (192-230)||(24386283-24386321)
chr6 (117-180)||(7706936-7707000)
chr6 (122-177)||(10304802-10304858)
[»] chr2 (14 HSPs)
chr2 (82-257)||(1400680-1400856)
chr2 (72-257)||(28527220-28527404)
chr2 (72-257)||(30905947-30906133)
chr2 (84-257)||(33667342-33667516)
chr2 (128-257)||(43900555-43900685)
chr2 (119-257)||(45305993-45306131)
chr2 (85-180)||(30906150-30906246)
chr2 (84-248)||(34175155-34175309)
chr2 (111-180)||(41212411-41212480)
chr2 (85-164)||(33667252-33667331)
chr2 (162-257)||(7378457-7378551)
chr2 (111-180)||(45305907-45305977)
chr2 (84-180)||(7378566-7378663)
chr2 (147-180)||(1400873-1400906)
[»] chr8 (29 HSPs)
chr8 (111-257)||(38606763-38606910)
chr8 (82-257)||(15714601-15714777)
chr8 (107-249)||(5321892-5322036)
chr8 (106-257)||(26493267-26493418)
chr8 (111-230)||(24575842-24575962)
chr8 (73-257)||(5573807-5573992)
chr8 (121-230)||(26914637-26914746)
chr8 (149-243)||(1251450-1251545)
chr8 (149-257)||(1240874-1240982)
chr8 (122-257)||(6809822-6809959)
chr8 (196-257)||(29367076-29367137)
chr8 (133-257)||(31596822-31596947)
chr8 (76-180)||(1251575-1251680)
chr8 (130-257)||(31273516-31273644)
chr8 (194-253)||(15233259-15233318)
chr8 (111-180)||(31596735-31596805)
chr8 (84-198)||(28700053-28700166)
chr8 (125-180)||(5573734-5573790)
chr8 (87-198)||(15233134-15233245)
chr8 (72-232)||(24537873-24538039)
chr8 (107-184)||(28700239-28700317)
chr8 (84-180)||(33286130-33286227)
chr8 (121-184)||(5322057-5322121)
chr8 (76-160)||(24576180-24576264)
chr8 (136-194)||(24920075-24920134)
chr8 (133-194)||(24919863-24919925)
chr8 (111-167)||(26493449-26493503)
chr8 (216-257)||(32959587-32959628)
chr8 (77-180)||(38606927-38607031)
[»] chr4 (25 HSPs)
chr4 (72-257)||(1966731-1966914)
chr4 (111-257)||(42908595-42908741)
chr4 (72-257)||(19596809-19596996)
chr4 (84-257)||(17633250-17633423)
chr4 (111-257)||(9809101-9809250)
chr4 (111-255)||(14351091-14351236)
chr4 (111-257)||(24669211-24669347)
chr4 (111-257)||(9810787-9810937)
chr4 (111-180)||(17633440-17633510)
chr4 (111-184)||(55666920-55666993)
chr4 (139-245)||(16583635-16583742)
chr4 (191-257)||(33179775-33179841)
chr4 (76-180)||(16583501-16583606)
chr4 (131-257)||(35544376-35544501)
chr4 (193-257)||(33249634-33249698)
chr4 (112-257)||(8740725-8740872)
chr4 (84-180)||(9808987-9809084)
chr4 (84-180)||(9810673-9810770)
chr4 (115-167)||(35544532-35544584)
chr4 (73-198)||(24669074-24669201)
chr4 (155-230)||(2433765-2433842)
chr4 (193-253)||(55666844-55666903)
chr4 (76-167)||(19596685-19596776)
chr4 (106-160)||(33249568-33249622)
chr4 (134-180)||(1966931-1966979)
[»] chr5 (26 HSPs)
chr5 (105-257)||(13312625-13312778)
chr5 (82-257)||(42034783-42034959)
chr5 (111-257)||(22169484-22169631)
chr5 (114-257)||(35922759-35922903)
chr5 (121-257)||(38521914-38522049)
chr5 (122-253)||(19621419-19621551)
chr5 (111-257)||(31189605-31189747)
chr5 (73-257)||(33958878-33959062)
chr5 (70-232)||(15221616-15221779)
chr5 (72-181)||(36169302-36169411)
chr5 (138-247)||(30045885-30045994)
chr5 (76-180)||(36169432-36169536)
chr5 (139-226)||(2477312-2477400)
chr5 (121-194)||(19621557-19621631)
chr5 (82-164)||(43262816-43262898)
chr5 (82-167)||(35922619-35922704)
chr5 (197-257)||(43262708-43262768)
chr5 (194-257)||(30704398-30704461)
chr5 (83-166)||(31189488-31189571)
chr5 (76-179)||(13312504-13312607)
chr5 (89-167)||(7155998-7156076)
chr5 (76-180)||(22169362-22169467)
chr5 (162-251)||(43461688-43461777)
chr5 (162-242)||(622500-622578)
chr5 (194-257)||(7156119-7156182)
chr5 (135-178)||(2477255-2477299)
[»] chr3 (45 HSPs)
chr3 (121-257)||(3823680-3823815)
chr3 (82-256)||(26308546-26308721)
chr3 (121-257)||(3785990-3786125)
chr3 (82-257)||(42637865-42638038)
chr3 (121-257)||(5341903-5342040)
chr3 (90-257)||(31545643-31545811)
chr3 (107-245)||(11501309-11501448)
chr3 (91-257)||(22432357-22432524)
chr3 (73-257)||(19280225-19280409)
chr3 (121-257)||(4169053-4169187)
chr3 (132-255)||(19624334-19624459)
chr3 (121-257)||(27707700-27707837)
chr3 (121-229)||(11509989-11510100)
chr3 (82-178)||(18733581-18733677)
chr3 (121-257)||(39126191-39126329)
chr3 (111-257)||(1705605-1705752)
chr3 (121-257)||(44080284-44080420)
chr3 (122-257)||(34627245-34627381)
chr3 (85-180)||(1705769-1705863)
chr3 (162-257)||(42481327-42481422)
chr3 (82-180)||(3823562-3823661)
chr3 (89-257)||(27335307-27335465)
chr3 (76-167)||(3785867-3785958)
chr3 (194-257)||(27365008-27365071)
chr3 (76-184)||(11509808-11509917)
chr3 (190-254)||(9710739-9710802)
chr3 (93-180)||(27040686-27040774)
chr3 (111-180)||(44080196-44080267)
chr3 (194-257)||(27326047-27326110)
chr3 (194-257)||(27332284-27332347)
chr3 (122-180)||(42638055-42638114)
chr3 (203-253)||(23163787-23163837)
chr3 (115-180)||(27079394-27079460)
chr3 (115-180)||(27085191-27085257)
chr3 (72-180)||(33488340-33488449)
chr3 (193-257)||(13358110-13358174)
chr3 (82-180)||(19280111-19280208)
chr3 (193-257)||(27079314-27079378)
chr3 (193-257)||(27085111-27085175)
chr3 (76-146)||(9710852-9710922)
chr3 (111-173)||(11501248-11501310)
chr3 (73-192)||(27326158-27326278)
chr3 (73-192)||(27332395-27332515)
chr3 (107-167)||(27707610-27707670)
chr3 (186-230)||(55165099-55165143)
[»] scaffold1126 (2 HSPs)
scaffold1126 (82-257)||(114-291)
scaffold1126 (85-180)||(308-404)
[»] scaffold0126 (2 HSPs)
scaffold0126 (82-202)||(21424-21545)
scaffold0126 (76-180)||(21579-21682)
[»] scaffold0251 (1 HSPs)
scaffold0251 (177-257)||(10617-10697)
[»] scaffold0043 (1 HSPs)
scaffold0043 (194-257)||(87049-87112)
[»] scaffold0024 (1 HSPs)
scaffold0024 (194-253)||(112176-112235)
[»] scaffold0291 (1 HSPs)
scaffold0291 (194-246)||(5895-5947)
[»] scaffold0123 (1 HSPs)
scaffold0123 (190-257)||(24036-24102)
[»] scaffold0213 (1 HSPs)
scaffold0213 (119-180)||(24738-24800)
[»] scaffold0016 (1 HSPs)
scaffold0016 (72-156)||(49409-49492)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 31303736 - 31303480
Alignment:
Q  1 gagattttataggtgaagaaaaaggtgtttaacgtggatgaaagaaatagtgggacattcatgtattataccaatgattgctagacacctttaatgtcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31303736 gagattttataggtgaagaaaaaggtgtttaacgtggatgaaagaaatagtgggacattcatgtattataccaatgattggtagacacctttaatgtcta 31303637  T
Q  101 catccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatt 200  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31303636 catccttttataccactcaaaaaaatttcagttaacaaaatatatggtatgtgtgaccacattttttagttgcgtgaccactatgtttccagaatttatt 31303537  T
Q  201 tggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||    
T  31303536 tggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacattt 31303480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 80 - 257
Target Start/End: Complemental strand, 21589828 - 21589650
Alignment:
Q  80 gctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgac 178  Q
    |||| ||||| ||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||| ||||    
T  21589828 gctaaacacccttaatgtgtacatccgtttataccactctaaaaaatttcagttatccaaatatatggtctgtgtgaccacatttttttagttgcatgac 21589729  T
Q  179 cattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || ||| ||||||||| ||||||| |||| |||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  21589728 cactatttttccagaacttatttgattaattaagtggaaaaatagtggtcacacgcattttagttgcatgaccacattt 21589650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 4291039 - 4290854
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agt 170  Q
    ||||||| | |||| ||||||||||| |  |||  ||| ||| ||||| |||||||||||||||||||||| ||||| ||| ||||||| |||||| |||    
T  4291039 caatgataggtagatacctttaatgtgtcaatctctttgtactactttgaaaaatttcagttaaccaaataaatgatctgtatgaccacgtttttttagt 4290940  T
Q  171 tgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| ||  ||| ||||||||||||||||||||||||| ||||||||||||||| | ||  ||||||||||||||||||||    
T  4290939 tgcgtgaccactagtttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcaca-cttagttgcgtgaccacattt 4290854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 28804883 - 28805071
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttt----tt 167  Q
    ||||||| | |||||||| ||||| | |||| |||||| ||||| | || ||||||||||||||||||||||||| | | ||||||||||||||    ||    
T  28804883 caatgataggtagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacatttttttttt 28804982  T
Q  168 agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||| ||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||| | | |||||| |||| ||||||||||||    
T  28804983 agttgtgtgaccactatatttccataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccacattt 28805071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 18313000 - 18312853
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    ||||||| | ||||||||||| |||||||||||||| | |||||| | | ||||||| ||||||||||||| ||| |||| |||||||||| ||||||||    
T  18313000 taccactctgaaaaatttcagctaaccaaatatatggtttgtgtggctaaatttttttagttgcgtgaccactatttttcaagaatttattaggttaact 18312901  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||||||    
T  18312900 aagtggaaaaatagtggtcacatgcattttagttgcgtgagcacattt 18312853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 21548618 - 21548479
Alignment:
Q  119 taaaaaatttcagttaaccaaatatatgatatgtgtgaccacattt-tttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaa 217  Q
    |||||||||||||||||| ||||||||| | ||||||| || |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  21548618 taaaaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactatttttccagaatttatttggttaactaagtggaa 21548519  T
Q  218 aaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||| |||||| || | ||||  ||||||||||||||||||    
T  21548518 aaacagtggttacgcgcattcgagttgcgtgaccacattt 21548479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 5083724 - 5083873
Alignment:
Q  107 tttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggtta 206  Q
    |||||| |||||| ||||||||||||||| |||||||||| | | |||||||||||||||||||| |||||||| ||| |||| ||||||||||| ||||    
T  5083724 tttatatcactttgaaaaatttcagttaatcaaatatatggtctttgtgaccacattttttagttacgtgaccactatttttctagaatttatttcgtta 5083823  T
Q  207 actaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || ||||  ||||||||||||||| | || |||||||||||||||| ||||    
T  5083824 acaaagttgaaaaatagtggtcacccgca-tttagttgcgtgaccatattt 5083873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 15958244 - 15958358
Alignment:
Q  107 tttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccaca-ttttttagttgcgtgaccattatgtttccagaatttatttggtt 205  Q
    |||||| |||||| |||||||| ||||||||||||||||| |  ||||||||||| ||||||||||| ||||||| ||| ||| ||||||||||||||||    
T  15958244 tttatatcactttgaaaaatttaagttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactattttttcagaatttatttggtt 15958343  T
Q  206 aactaagtgaaaaaa 220  Q
    || ||||| ||||||    
T  15958344 aaataagtaaaaaaa 15958358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 20556940 - 20556793
Alignment:
Q  114 cactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttag-ttgcgtgaccattatgtttc---cagaatttatttggttaact 209  Q
    |||||| |||| ||||||||||| ||||||||  | ||| |||||||||||||| | ||| ||||||| ||| |||    ||||||||||||||||||||    
T  20556940 cactttgaaaattttcagttaactaaatatatagtctgtttgaccacatttttttggttgagtgaccactatttttttttcagaatttatttggttaact 20556841  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||| ||||||| ||||||| |  |||||||||||||||||||||||    
T  20556840 aagtggaaaaatattggtcacgcgtattttagttgcgtgaccacattt 20556793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 32964954 - 32964855
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacat-tttttagttgcgtgacca 180  Q
    |||||||||||||||| |||| |||||| || |||| |||||||||| ||||||| | ||||||| | ||||||||||||| ||||||||||||||||||    
T  32964954 tagacacctttaatgtatacacccttttgtatcactctaaaaaatttaagttaactatatatatggtctgtgtgaccacatatttttagttgcgtgacca 32964855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 22740646 - 22740741
Alignment:
Q  162 ttttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||| ||||||||| | ||| ||| ||||||||||||||||||||||||| ||||||| || |||| |  |||||||||||||||||| ||||    
T  22740646 ttttttaattgcgtgactactattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccatattt 22740741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 28805227 - 28805125
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcg 174  Q
    ||||| |||||||| ||||||| || | || ||| || |||| | |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  28805227 gattggtagacacccttaatgtgtatacccctttgtatcactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacattttttcagttgcg 28805128  T
Q  175 tga 177  Q
    |||    
T  28805127 tga 28805125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 32964658 - 32964779
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgt 175  Q
    ||||| |||||| | ||||||| ||||| | |||| |||||| |||| ||||| ||||||| ||||||||| |||||||||||| |||||| | ||| ||    
T  32964658 gattggtagacatccttaatgtgtacattcatttacaccactctaaagaatttaagttaactaaatatatggtatgtgtgaccatatttttcaattgtgt 32964757  T
Q  176 gaccattatgtttccagaattta 198  Q
    ||||| ||| ||||||| |||||    
T  32964758 gaccactat-tttccagcattta 32964779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 46943761 - 46943826
Alignment:
Q  194 atttatttggttaactaagtgaaaa--aatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||||||||||||||  |||||||||||| | |||||||||||||||| |||||||    
T  46943761 atttatttggttaactaagtgaaaaaaaatagtggtcacgcgcattttagttgcgtgatcacattt 46943826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 31303358 - 31303463
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcg 174  Q
    ||||| |||||||| ||||||| ||||||| ||| || |||| | |||||||||||| ||||||||| ||| | || ||||||||||||||| | |||||    
T  31303358 gattggtagacacccttaatgtgtacatccatttgtatcactctgaaaaatttcagtcaaccaaatacatggtctgcgtgaccacattttttcaattgcg 31303457  T
Q  175 tgacca 180  Q
    ||||||    
T  31303458 tgacca 31303463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 5174998 - 5174910
Alignment:
Q  153 gtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcatttta 240  Q
    ||||||||||||||| | | ||||||||| ||  ||| ||||||||||||| ||||||||||| ||||||||||||||| | |||||||    
T  5174998 gtgaccacatttttttaatcgcgtgaccactaatttttcagaatttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 22032981 - 22033056
Alignment:
Q  91 ttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||||| ||||||||||  ||||||| |  ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  22032981 ttaatgtgtacatcctttg-taccactctttaaaatttaagttaaccaaatatatggtatgtgtgaccacatttttt 22033056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 22033253 - 22033147
Alignment:
Q  91 ttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttc 189  Q
    ||||||| ||||||||||  ||||| | | |||||||| ||||||||||||||||| | |||||||||| ||||||| ||||||||||||| ||| |||     
T  22033253 ttaatgtgtacatcctttg-taccattctgaaaaattttagttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactat-tttt 22033156  T
Q  190 cagaattta 198  Q
    |||||||||    
T  22033155 cagaattta 22033147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 15958472 - 15958416
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgac 178  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||| |||||| ||||    
T  15958472 aaaatttcagttaactaaatatatggtctgtgtgaccacatttttaagttgcatgac 15958416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 27523442 - 27523541
Alignment:
Q  132 ttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttc-cagaatttatttggttaactaagtgaaaaaatagtggtca 229  Q
    |||| |||||||||||| ||||||| |||||||||| ||||| || || | ||| |||  |||||||||||||||||| |||||| ||||||||| ||||    
T  27523442 ttaatcaaatatatgatctgtgtgatcacatttttttagttgtgtaactactatttttttcagaatttatttggttaattaagtggaaaaatagtagtca 27523541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 5083949 - 5083890
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    ||||||||| || | |||||||||| |||||||||||||||||||| | |||||||||||    
T  5083949 aaaatttcaattcatcaaatatatggtatgtgtgaccacattttttcaattgcgtgacca 5083890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 20556717 - 20556776
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    ||||||||||||||||||||||||| |  ||||||||| ||||||| ||||| |||||||    
T  20556717 aaaatttcagttaaccaaatatatggtcggtgtgaccatattttttcagttgtgtgacca 20556776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 29676982 - 29677167
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagtt 171  Q
    ||||||| | |||||||||||||||| ||| ||| ||| || |||||| |||||||| |||||||||||||||||   ||||||||||||||||||||||    
T  29676982 caatgatagttagacacctttaatgtgtacgtccctttgtagcactttgaaaaattttagttaaccaaatatatggcctgtgtgaccacattttttagtt 29677081  T
Q  172 gcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || |||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  29677082 gcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacattt 29677167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 255
Target Start/End: Complemental strand, 34364443 - 34364260
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagtt 171  Q
    ||||||||| | ||||| ||||| || ||||||| ||| ||| ||| | |||||||| |||||| |||||||||| | ||||| | |||||| |||||||    
T  34364443 caatgattggttgacacatttaacgtgtacatccctttgtactactctgaaaaatttaagttaatcaaatatatgctctgtgtaatcacattctttagtt 34364344  T
Q  172 gcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacat 255  Q
    | ||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||| ||||||||||    
T  34364343 gtgtgaccattatttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacat 34364260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 108 - 257
Target Start/End: Original strand, 29167743 - 29167891
Alignment:
Q  108 ttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaa 207  Q
    |||||||| ||| |||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||| ||  ||| | ||||||||||||||||    
T  29167743 ttataccattttgaaaaatttcagttaactaaatatatggtttgtgtgaccacattttttagttgcctgaccactagtttttcggaatttatttggttaa 29167842  T
Q  208 ctaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||| ||||||||||||||  | ||||||| ||||||||||| ||||    
T  29167843 ctaagtggaaaaatagtggtcatgcgcatttta-ttgcgtgaccatattt 29167891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 257
Target Start/End: Complemental strand, 5831734 - 5831559
Alignment:
Q  83 agacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccat 181  Q
    |||||||||||| || |||| || ||| || |||| | |||||||||| ||||||||||||||| | |||||||||| ||||||| |||||||||||||     
T  5831734 agacacctttaacgtgtacacccctttgtatcactctgaaaaatttcaattaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccac 5831635  T
Q  182 tatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||  ||||||||||||||||||||||||||||| |||||| ||||| | || |||||||||| || ||||| ||||    
T  5831634 taattttccagaatttatttggttaactaagtggaaaaattgtggtaatacgcattttagttacgggaccatattt 5831559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 38952071 - 38951941
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaa 219  Q
    |||||||||||||||| |||| |||| ||| |||||||| ||||||| |||||| |||||| ||| | |||| |||||||||||||||||||||  ||||    
T  38952071 aaaaatttcagttaacaaaatgtatggtatatgtgaccatatttttttagttgcttgaccactatttctccaaaatttatttggttaactaagtagaaaa 38951972  T
Q  220 atagtggtcacactcattttagttgcgtgac 250  Q
    |||||||||| || |||||||||||||||||    
T  38951971 atagtggtcagacgcattttagttgcgtgac 38951941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 42604392 - 42604258
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    ||||||||| |||| |||  ||||| |||||||||| | |||||||||||||| ||||||||| |||| || ||| ||| |||||||||||| |||||||    
T  42604392 taccactttgaaaatttttggttaatcaaatatatggtttgtgtgaccacattgttttagttgtgtgatcactattttttcagaatttatttcgttaact 42604293  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttg 244  Q
    ||||| ||||||||||||||| | |||||||||||    
T  42604292 aagtggaaaaatagtggtcacgcgcattttagttg 42604258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 2570071 - 2569962
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaa 220  Q
    ||||||| |||||||||| |||||| | ||||| |||| ||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||| |||||    
T  2570071 aaaatttaagttaaccaagtatatggtttgtgttaccatattttttgagttgcgtgaccactatttttctagaatttatttggttaactaagtggaaaaa 2569972  T
Q  221 tagtggtcac 230  Q
    ||||||||||    
T  2569971 tagtggtcac 2569962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 34490391 - 34490215
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgacca 180  Q
    |||||||  ||||||| |||| |  ||| ||||||| | ||||||||||||| || ||||||||| | |||||||||||||| |||||||||||||||||    
T  34490391 tagacactcttaatgtgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttgcgtgacca 34490292  T
Q  181 tta-tgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
     || | ||| |||||||||||||||||||||| |  ||||||||||||||  | ||||||| |||| |||||||||||    
T  34490291 ctagttttttcagaatttatttggttaactaactagaaaaatagtggtcatgcgcatttta-ttgcatgaccacattt 34490215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 25238650 - 25238504
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    ||||||| | ||||||||||||||| |||||||||| | | |||||||||||||||| ||||  ||||| | ||  ||| ||||||||||||||||||||    
T  25238650 taccactctgaaaaatttcagttaatcaaatatatggtttctgtgaccacatttttttagttatgtgactactagtttttcagaatttatttggttaact 25238551  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||| |||||||||||| || | ||||||| || |||||||||||||    
T  25238550 aagtggaaaaatagtggttacgcacatttta-ttacgtgaccacattt 25238504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 5855317 - 5855208
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattt-tttagt 170  Q
    ||||||| | ||||||||  |||| | ||||  ||||| ||||||| | |||||||| ||||||||||||||||| |||||||||||||||||  |||||    
T  5855317 caatgataggtagacaccactaatatgtacactcttttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttagttagt 5855218  T
Q  171 tgcgtgacca 180  Q
    ||||||||||    
T  5855217 tgcgtgacca 5855208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 9929677 - 9929778
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaa 220  Q
    ||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||| ||||  ||| ||| || ||||||||||||||||||| || |||||    
T  9929677 aaaatttaagttaaccaaatatatggtttgtatgaccacattattttagttgcgcgaccgatattttttcaaaatttatttggttaactaaatggaaaaa 9929776  T
Q  221 ta 222  Q
    ||    
T  9929777 ta 9929778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 13350894 - 13350979
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    |||||| | ||||||| |||| |||||| ||||||| |  ||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  13350894 tagacatccttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggtatgtgtgatcacgtttttt 13350979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 13351098 - 13351008
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacat 162  Q
    ||||||| |||||||| ||||||||| |||| || ||| ||||||| | |||||||| | ||||||||||||||| | | |||||||||||    
T  13351098 caatgatagctagacatctttaatgtgtacacccctttgtaccactctgaaaaatttaacttaaccaaatatatggtctttgtgaccacat 13351008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 9929951 - 9929862
Alignment:
Q  106 ttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaa 194  Q
    |||| ||||| ||| |||||||||| ||||| ||||||||| | |||||||||||||||||| | ||||||||||| ||| ||| |||||    
T  9929951 ttttgtaccattttgaaaaatttcaattaactaaatatatggtctgtgtgaccacattttttcatttgcgtgaccactattttttcagaa 9929862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 38244863 - 38244791
Alignment:
Q  123 aaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaa 194  Q
    |||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  38244863 aaatttaagttagccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactatcttttcagaa 38244791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 517571 - 517512
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgacca 180  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||| | |||||| ||||    
T  517571 aaaaatttaagttaaccaaatatatgatatgtgcaaccacatttttcaattgcgtaacca 517512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 5855018 - 5855116
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacat-tttttagttgcgtgacca 180  Q
    |||||||  ||||||| ||||||| ||| ||| |||| |||| ||||||| |||||||||||||| | ||||||||||||| |||| ||||| |||||||    
T  5855018 tagacacgcttaatgtttacatccctttgtactacttgaaaa-atttcagctaaccaaatatatggtctgtgtgaccacatattttcagttgtgtgacca 5855116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 28499722 - 28499643
Alignment:
Q  89 ctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttta 168  Q
    |||||| || |||||| |||| ||||| | |||||||||||||||||||||||||||| |  |  |||||||||||||||    
T  28499722 ctttaacgtgtacatcattttgtaccattctaaaaaatttcagttaaccaaatatatggtccggatgaccacatttttta 28499643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 517433 - 517487
Alignment:
Q  195 tttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtga 249  Q
    ||||||||||||||||||| |||||||||| ||||   |||||||||||||||||    
T  517433 tttatttggttaactaagttaaaaaatagtagtcatgttcattttagttgcgtga 517487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 2995924 - 2995997
Alignment:
Q  93 aatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||| ||||||||||| ||||||||| ||||| || | |||| |||||||||| | ||||||||||||||||||    
T  2995924 aatgtgtacatccttttgtaccactttgaaaaaatttaattaatcaaatatatggt-tgtgtgaccacatttttt 2995997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 2996101 - 2996039
Alignment:
Q  195 tttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||||||| | |||||||| || ||| | ||||||| ||||||||||||||||    
T  2996101 tttatttggttaactaagcggaaaaatagcggccacgcgcattttatttgcgtgaccacattt 2996039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 17227288 - 17227346
Alignment:
Q  136 ccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaa 194  Q
    ||||||||||| ||||||||||||||||||| || |||||||||| ||| ||| |||||    
T  17227288 ccaaatatatggtatgtgtgaccacatttttaaggtgcgtgaccactattttttcagaa 17227346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 34490091 - 34490184
Alignment:
Q  73 aatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    |||||||| |||||||| ||||||| || ||| |||  ||||||| |  ||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  34490091 aatgattggtagacacccttaatgtgtatatcttttggtaccactatgtaaaatttcagttaactaaatatatggtctgtgtga-cacatttttt 34490184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 9468064 - 9468105
Alignment:
Q  126 tttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  9468064 tttcagttaaccaaatatatggtatgtgtgaccatatttttt 9468105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 257
Target Start/End: Complemental strand, 9468261 - 9468135
Alignment:
Q  124 aatttcagttaaccaaatatatgatatgtgtgaccacatttttt--agttgcgtgaccattatgtttccagaatttatttggttaactaagtga-aaaaa 220  Q
    ||||| ||||||||||||||||| | | |||||||| |||||||  |||||||||| ||||||         |||||||||||||||||||||  |||||    
T  9468261 aatttaagttaaccaaatatatggt-tctgtgaccatattttttttagttgcgtgatcattat---------atttatttggttaactaagtggcaaaaa 9468172  T
Q  221 tagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||| ||||||  ||||||||||| |||| |||||||    
T  9468171 tagtagtcacatacattttagttgtgtgatcacattt 9468135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 2569904 - 2569979
Alignment:
Q  119 taaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt---agttgcgtgaccattatgtttcca 191  Q
    |||||| |||| |||||||||||||||| | |||||||| |||||||||   | ||||||||||| ||| ||||||    
T  2569904 taaaaattttcggttaaccaaatatatggtctgtgtgactacattttttttcaattgcgtgaccactatttttcca 2569979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 42604120 - 42604184
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatg 146  Q
    |||||| | ||||||| |||| || ||| ||||| |||||||||||||| |||||||||| ||||    
T  42604120 tagacaaccttaatgtgtacacccatttgtaccattttaaaaaatttcaattaaccaaatgtatg 42604184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 10304636 - 10304776
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaacta 210  Q
    ||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||| | | |||||||||||||||||||||||||    
T  10304636 taccactctaaaaaatttcagttaaccaaatatatggtctgtgtgaccacactttttaattgcgtgaccactttttttccagaatttatttggttaacta 10304735  T
Q  211 agtgaaaaaatagtggtcacactcattttagttgcgtgacc 251  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  10304736 agtgaaaaaatagtggtcacgcgcattttagttgcgtgacc 10304776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 138646 - 138797
Alignment:
Q  107 tttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttt-ttagttgcgtgaccattatgtttccagaatttatttggtt 205  Q
    ||||||||||| ||||||| || ||||||||||||||||| | |||||| ||||||||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  138646 tttataccactctaaaaaaatttagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggtt 138745  T
Q  206 aactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
     |||||||| ||||||||||||| | | || |||||||||||||||||||||    
T  138746 gactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacattt 138797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 146667 - 146818
Alignment:
Q  107 tttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttt-ttagttgcgtgaccattatgtttccagaatttatttggtt 205  Q
    ||||||||||| ||||||| || ||||||||||||||||| | |||||| ||||||||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  146667 tttataccactctaaaaaaatttagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggtt 146766  T
Q  206 aactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
     |||||||| ||||||||||||| | | || |||||||||||||||||||||    
T  146767 gactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacattt 146818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 2430513 - 2430662
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccacttt-aaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgacca 180  Q
    |||||||| ||||||| ||||| | ||| ||||| | | ||||||||||||||||| ||||||||||| ||||||||||  |||||||||||| ||||||    
T  2430513 tagacacccttaatgtgtacattcctttgtaccattctgaaaaaatttcagttaactaaatatatgatctgtgtgaccattttttttagttgcatgacca 2430612  T
Q  181 ttatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcac 230  Q
     ||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  2430613 ctattttttcagaatttatttggttaactaagtggaaaaatagtggtcac 2430662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 257
Target Start/End: Complemental strand, 9068599 - 9068433
Alignment:
Q  91 ttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgaccattatgtttc 189  Q
    ||||||| |||| |||||| ||||||| | |||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||    
T  9068599 ttaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactatttttc 9068500  T
Q  190 cagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||| |||||| ||| |||||||| |||||||||  |||| | |||||||| || ||||||||||||    
T  9068499 cagaacttattt-gtttactaagtggaaaaatagtaatcacgcgcattttagatgtgtgaccacattt 9068433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 3222624 - 3222458
Alignment:
Q  93 aatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttt-tagttgcgtgaccattatgttt-cc 190  Q
    ||||| ||||| | ||| || |||| |||||||  | |||||| |||||||||| | ||||||||||||||||| ||||| |||||||| ||| ||| ||    
T  3222624 aatgtgtacattcgtttgtatcactctaaaaaagattagttaatcaaatatatggtctgtgtgaccacatttttctagttacgtgaccactatattttcc 3222525  T
Q  191 agaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||| |||||    
T  3222524 agaatttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgcattt 3222458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 257
Target Start/End: Original strand, 3620675 - 3620842
Alignment:
Q  91 ttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattt-tttagttgcgtgaccattatgtttc 189  Q
    ||||||| ||||||| ||||||||||| | ||   ||| |||||| |||||||||| | |||||||| ||| || |||| ||||| ||||| ||| |||     
T  3620675 ttaatgtgtacatccatttataccactctgaatttttttagttaaacaaatatatggtttgtgtgactacaattctttacttgcgcgaccactatttttt 3620774  T
Q  190 cagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||| |||||||    
T  3620775 cagaatttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacattt 3620842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 2835175 - 2834989
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agt 170  Q
    ||||||| | |||||| | ||||||| || |||  ||| ||||||| | |||||||| |||||||||||||||  || |||||||||||||||||| |||    
T  2835175 caatgataggtagacagccttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatataccatctgtgtgaccacatttttttagt 2835076  T
Q  171 tgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || || |||| ||| |||||| ||||||||| |||| ||||||| ||||||| ||||||| |  ||||||||||| |||||| ||||    
T  2835075 tgtgtaaccactatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagttgcatgaccatattt 2834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 22608566 - 22608387
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatat---atgatatgtgtgaccacatt-ttttagttgcgtga 177  Q
    ||||||| |||||| | |||| || ||| || || ||| |||| ||||||||||||||||||   ||||| |||||||||| ||| ||||||||||||||    
T  22608566 tagacacttttaatatgtacacccctttgtatcattttgaaaattttcagttaaccaaatattatatgatctgtgtgaccatattgttttagttgcgtga 22608467  T
Q  178 ccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||| ||  ||| ||||| ||||||| |||||||| | |||||||||||||||  | |||||||||||| |||||||||||    
T  22608466 ccactaatttttcagaaattatttgattaactaattcaaaaaatagtggtcatgcacattttagttgcatgaccacattt 22608387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 33814961 - 33815098
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacattt-tttagttgcgtgacca-ttatgtttccagaatttatttggttaactaagtgaaaaa 219  Q
    ||||||| |||||| |||||||||| | ||| |||||| || | |||||||||| ||||| || | ||| ||||||||||||||||||||||||| ||||    
T  33814961 aaaatttaagttaatcaaatatatggtttgtatgaccatatctgtttagttgcgcgaccactttttttttcagaatttatttggttaactaagtggaaaa 33815060  T
Q  220 atagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || |||||||| | ||||||||||||||||||||||||    
T  33815061 atggtggtcacgcgcattttagttgcgtgaccacattt 33815098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 23595344 - 23595202
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccat 181  Q
    |||||| | ||||| | |||| |||||| ||  ||| |||||||||||| ||||||||||||||  | |||||||||||||||||| |||  |||||||     
T  23595344 tagacaaccttaatatgtacacccttttgtattactctaaaaaatttcaattaaccaaatatatagtctgtgtgaccacatttttttgtt--gtgaccac 23595247  T
Q  182 tatgtttccagaatttatttggttaactaagtgaaaaaatagtgg 226  Q
    ||  ||| |||||||||||| |||||||||||| |||||||||||    
T  23595246 taatttttcagaatttattttgttaactaagtggaaaaatagtgg 23595202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 30056032 - 30056152
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccaca--ttttttagttgcgtgacc 179  Q
    |||||||||||||||| |||  || ||| ||| ||| |||||||||||||||||||||||||||| | | ||||||||||  |||||| |||||||||||    
T  30056032 tagacacctttaatgtatactcccctttgtacaactctaaaaaatttcagttaaccaaatatatggtctatgtgaccacatttttttttgttgcgtgacc 30056131  T
Q  180 attatgtttccagaatttatt 200  Q
    | ||| ||| |||||||||||    
T  30056132 actattttttcagaatttatt 30056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 7706764 - 7706881
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt--agttgc 173  Q
    ||||| || ||||||||||||| ||||||||||| ||||| | | |||||||| ||||||   |||||||| | ||||||||||||||||||  ||||||    
T  7706764 gattgataaacacctttaatgtgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgaccacatttttttcagttgc 7706863  T
Q  174 gtgaccattatgtttcca 191  Q
    ||||||| ||| ||||||    
T  7706864 gtgaccactatttttcca 7706881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 9474718 - 9474657
Alignment:
Q  195 tttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta-tttcgtgaccacattt 9474657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 20084589 - 20084683
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttta-gttgcgtga 177  Q
    |||||| ||||||| ||||||| |||||||||   | |||||||| ||||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  20084589 gacacccttaatgtgtacatccctttataccatgctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatattttatgttgcgtga 20084683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 24386412 - 24386318
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacat-tttttagttgcgtga 177  Q
    |||||| ||||||| ||||||| ||||||||||  | |||||||| ||||||||||||||||| | ||||||||||||| ||||| |||||||||    
T  24386412 gacacccttaatgtgtacatccctttataccacgctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacatattttttgttgcgtga 24386318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 22608281 - 22608370
Alignment:
Q  91 ttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgacca 180  Q
    ||||||| |||| || ||| ||||||| | |||||||| ||||||||||||||||| | |||||||| |||||||| |||||||||||||    
T  22608281 ttaatgtgtacacccctttgtaccactctcaaaaattttagttaaccaaatatatggtctgtgtgactacatttttcagttgcgtgacca 22608370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 11108274 - 11108175
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||||| ||||||| || ||| |||| ||  | | ||||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  11108274 tagacacccttaatgtgtatatctttttgtattattctaaaaaaattcaattaaccaaatatatgatttgtgtgaccacattttttcagttgcgtgacca 11108175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 7915787 - 7915697
Alignment:
Q  91 ttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccac-attttttagttgcgtgacca 180  Q
    ||||||| |||| ||| || ||||||| | ||||||||||||||| |||||||||  | ||||||||||| ||||||||||||||||||||    
T  7915787 ttaatgtgtacaccctcttttaccactctgaaaaatttcagttaatcaaatatatcgtctgtgtgaccacaattttttagttgcgtgacca 7915697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 7706932 - 7706864
Alignment:
Q  162 ttttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcac 230  Q
    ||||||||||||||||| | ||| ||||||||| |||||||||||  |||||| |||||||||||||||    
T  7706932 ttttttagttgcgtgacaactatttttccagaacttatttggttacttaagtggaaaaatagtggtcac 7706864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 2365704 - 2365649
Alignment:
Q  126 tttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  2365704 tttcagttaaccaaatatatggtatgcgtgaccacattttttcagttgcgtgacca 2365649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 2430706 - 2430645
Alignment:
Q  131 gttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttcca 191  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||| ||| ||||||    
T  2430706 gttaaccaaatatatggtttgtgtgaccacattttttcagttgcgtgaccactatttttcca 2430645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 23595066 - 23595150
Alignment:
Q  83 agacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||||||||||||| |||| |||||| || |||| |  ||||||| ||||||| ||||||||| | |||||||||| |||||||    
T  23595066 agacacctttaatgtgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtgaccatatttttt 23595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 7915608 - 7915683
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccacttt-aaaaaatttcagttaaccaaatatatgatatgtgtga 156  Q
    |||||||||||||||| |||| |||||| || |||| | |||||||||||||||| ||||||| || |||||||||    
T  7915608 tagacacctttaatgtgtacacccttttgtatcactctgaaaaaatttcagttaatcaaatatgtggtatgtgtga 7915683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 3222337 - 3222441
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcg 174  Q
    ||||| |||||||| ||||||| |||| |||||  ||  ||| | ||||||||||  |||||||||||||| | | |||||||||||||||| |||||||    
T  3222337 gattgatagacacccttaatgtgtacaccctttg-tattactcttaaaaatttcaaataaccaaatatatggtgtctgtgaccacattttttcagttgcg 3222435  T
Q  175 tgacca 180  Q
    ||||||    
T  3222436 tgacca 3222441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 11108115 - 11108160
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacattttt 166  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||    
T  11108115 aaaaatttcaattaaccaaatatatggtctgtgtgaccacattttt 11108160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 138895 - 138813
Alignment:
Q  77 attgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccac 160  Q
    |||| |||||||| || |||| |||| || ||| ||| ||| ||||||| |||||||||||||||||||| | |||||||||||    
T  138895 attggtagacaccattgatgtgtacacccctttgtactactctaaaaaaattcagttaaccaaatatatg-tgtgtgtgaccac 138813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 146916 - 146834
Alignment:
Q  77 attgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccac 160  Q
    |||| |||||||| || |||| |||| || ||| ||| ||| ||||||| |||||||||||||||||||| | |||||||||||    
T  146916 attggtagacaccattgatgtgtacacccctttgtactactctaaaaaaattcagttaaccaaatatatg-tgtgtgtgaccac 146834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 9068329 - 9068395
Alignment:
Q  107 tttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgc 173  Q
    ||||||||||| |  ||||| |||||||||||| |||||| | ||| ||||||||||||| ||||||    
T  9068329 tttataccactctcgaaaatatcagttaaccaagtatatggtctgtatgaccacatttttcagttgc 9068395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 9474536 - 9474645
Alignment:
Q  73 aatgattgctagacacctttaatgtctacatccttttataccact-ttaaaaaatttcagttaaccaaatatatga--tatgtgtgaccacatttttt-a 168  Q
    |||||| | |||||||  ||||||| ||||||||||| ||||||| || |||||||||||||| | || |||||||  ||| ||  |||||||||||| |    
T  9474536 aatgataggtagacactcttaatgtatacatccttttgtaccactcttgaaaaatttcagttagctaactatatgatctatatgacaccacattttttca 9474635  T
Q  169 gttgcgtgac 178  Q
    ||||||||||    
T  9474636 gttgcgtgac 9474645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 20084718 - 20084680
Alignment:
Q  192 gaatttatttggttaactaagtgaaaaaatagtggtcac 230  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  20084718 gaatttatttggttaactaagtgaaaaagtagtgatcac 20084680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 24386283 - 24386321
Alignment:
Q  192 gaatttatttggttaactaagtgaaaaaatagtggtcac 230  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  24386283 gaatttatttggttaactaagtgaaaaagtagtgatcac 24386321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 7707000 - 7706936
Alignment:
Q  117 tttaaaaaatttcagttaaccaaatatatgatatgtgtgaccaca-ttttttagttgcgtgacca 180  Q
    |||||||||||||||||||| ||||||||  | ||||| || ||| ||||||||||||| |||||    
T  7707000 tttaaaaaatttcagttaactaaatatatagtctgtgtaactacatttttttagttgcgagacca 7706936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 10304858 - 10304802
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtga 177  Q
    ||||||| ||| ||| ||||||||| | |||||||||||||||||| ||||||||||    
T  10304858 aaaattttagtgaactaaatatatggtctgtgtgaccacattttttcagttgcgtga 10304802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 1400680 - 1400856
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttta-gttgcgtgacca 180  Q
    |||||||| ||||||| |||| |||||| ||||| | | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  1400680 tagacacccttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgacca 1400779  T
Q  181 ttatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
     ||| |||||| |||||||||||||||||||||| |||||||||| |||| | |||||| |||| ||||||||||||    
T  1400780 ctatttttccataatttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccacattt 1400856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 28527220 - 28527404
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttt-ttagt 170  Q
    ||||||| | |||||||| ||||| | |||| || ||| ||||||||| ||||||||||| |||||||||||||| | |||||||||||||||| |||||    
T  28527220 caatgataggtagacacccttaat-tgtacacccctttgtaccactttgaaaaatttcagctaaccaaatatatggtctgtgtgaccacatttttttagt 28527318  T
Q  171 tgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| ||| |||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||| |||||| ||||||    
T  28527319 tgcgtgaccactatttttccagaatttatttggttaactaattggaaaaatagtggtcacacgcatgttagtt-cgtgacaacattt 28527404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 30905947 - 30906133
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattt-tttagt 170  Q
    ||||||| | |||||||  ||||||| ||||||| ||| || || | | |||| ||| ||||||||| ||||||  | ||||||||||||||| ||||||    
T  30905947 caatgataggtagacactcttaatgtgtacatccctttgtaacattctgaaaatttttagttaaccagatatattgtctgtgtgaccacatttatttagt 30906046  T
Q  171 tgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || ||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  30906047 tgtgtgaccactatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacattt 30906133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 257
Target Start/End: Complemental strand, 33667516 - 33667342
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttta-gttgcgtgaccatt 182  Q
    |||||| ||||| | ||||  ||||| ||||||| | |||||||| ||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |    
T  33667516 gacacccttaatatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccact 33667417  T
Q  183 atgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || ||| |||||| |||||||||||||||||| |||||||||||| || | ||||||| ||||||||||||||||    
T  33667416 attttttcagaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacattt 33667342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 43900685 - 43900555
Alignment:
Q  128 tcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtgg 226  Q
    ||||||||||||||||||||| ||||||| |||||||||| | ||||||||||  ||| ||| |||||||||||||||||||||| |  |||||||||||    
T  43900685 tcagttaaccaaatatatgatttgtgtgatcacatttttttaattgcgtgacccctattttttcagaatttatttggttaactaaatagaaaaatagtgg 43900586  T
Q  227 tcacactcattttagttgcgtgaccacattt 257  Q
    ||||   ||||||||||||||||||||||||    
T  43900585 tcacgtgcattttagttgcgtgaccacattt 43900555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 45306131 - 45305993
Alignment:
Q  119 taaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaa 217  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||| ||||  |||| || ||| |||  |||||||||| ||||||||||||| ||    
T  45306131 taaaaaatttaagt-aatcaaatatatgatatgtgtgaccacatttttttagttatgtgatcaatatttttttagaatttattcggttaactaagtggaa 45306033  T
Q  218 aaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||| | ||||||||||||||| ||||||||    
T  45306032 aaatagtggtcacgcacattttagttgcgtggccacattt 45305993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 30906246 - 30906150
Alignment:
Q  85 acacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgacca-cattttttagttgcgtgacca 180  Q
    ||||||||||||| |||| |||||| ||||||| | |||||||||||||||||||||||||| | || ||||||| ||||||| |||| ||||||||    
T  30906246 acacctttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtctgcgtgaccaccatttttcagtttcgtgacca 30906150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 248
Target Start/End: Complemental strand, 34175309 - 34175155
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgaccatt 182  Q
    |||||| ||||||| |||| || ||| ||||| | |||||||||| |||||| ||||||||| || |||||||| ||||| |||||||||||||| || |    
T  34175309 gacaccattaatgtgtacacccatttgtaccattctaaaaaatttaagttaatcaaatatataatttgtgtgacaacattgttttagttgcgtgatcact 34175210  T
Q  183 atgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtg 248  Q
    ||           ||||||||||||||||||| ||||||||  ||||||| |||||||||||||||    
T  34175209 at-----------ttatttggttaactaagtggaaaaatagcagtcacacacattttagttgcgtg 34175155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 41212480 - 41212411
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgacca 180  Q
    ||||||| | |||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  41212480 taccactctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacattttttagttgtgtgacca 41212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 33667252 - 33667331
Alignment:
Q  85 acacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattt 164  Q
    ||||| ||||||||||||||| |||| |||||| ||||||| |||| ||||||||||||||| | ||| |||||||||||    
T  33667252 acacccttaatgtctacatccctttacaccactctaaaaaaattcaattaaccaaatatatggtttgtatgaccacattt 33667331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 7378457 - 7378551
Alignment:
Q  162 ttttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||||||| | ||| |||  | |||||| | |||||| |||||| || |||||||||||||| |||||||||||||| |||| ||||    
T  7378457 ttttttagttgcgtgactactatttttttaaaatttaat-ggttaattaagtggaataatagtggtcacacacattttagttgcgtcaccatattt 7378551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 45305907 - 45305977
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    ||||||| ||||||||||||||||| |||||||||  | ||| |||||| ||||||| |||||||||||||    
T  45305907 taccactctaaaaaatttcagttaatcaaatatatagtctgtatgaccatattttttcagttgcgtgacca 45305977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 180
Target Start/End: Complemental strand, 7378663 - 7378566
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||||||||||  | |||||||||  |||| |   |||||||||||||||| ||||||||| | |||||||||| ||||||| |||||||| ||||    
T  7378663 gacacctttaatgcgtccatccttttgcaccattcagaaaaatttcagttaacaaaatatatggtttgtgtgaccatattttttcagttgcgtaacca 7378566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 1400906 - 1400873
Alignment:
Q  147 atatgtgtgaccacattttttagttgcgtgacca 180  Q
    |||||||||||||||||||| |||||||||||||    
T  1400906 atatgtgtgaccacatttttcagttgcgtgacca 1400873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 38606763 - 38606910
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    ||||||| | |||||||||||||||| ||||||||| |||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||    
T  38606763 taccactctgaaaaatttcagttaactaaatatatggtatgtgtgaccatatttttttagctgcgtgaccactatgtttccagaatttatttggttaact 38606862  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  38606863 aagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacattt 38606910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 15714601 - 15714777
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttt-ttagttgcgtgacca 180  Q
    |||||||||||||| | ||||   |||| ||||||| | |||||||||||||| | ||||||||||| | |||||||||||||| |||||||||||||||    
T  15714601 tagacacctttaatatgtacacatttttgtaccactctgaaaaatttcagttagctaaatatatgatttatgtgaccacattttgttagttgcgtgacca 15714700  T
Q  181 ttatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
     ||| ||| |  |||||||||||||||||||||| |||||||||||||||   |||||||||| |||||||| ||||    
T  15714701 ctattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatattt 15714777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 5321892 - 5322036
Alignment:
Q  107 tttataccactttaaaaaatttc-agttaaccaaatatatgatatgtgtgaccacatttt-ttagttgcgtgaccattatgtttccagaatttatttggt 204  Q
    |||||||| |||| ||||||||  ||||||  |||||||||  ||||||||||||||||| ||||||||||||||| ||| |||  ||||||||||||||    
T  5321892 tttatacctctttgaaaaattttgagttaattaaatatatggcatgtgtgaccacatttttttagttgcgtgaccactatttttttagaatttatttggt 5321991  T
Q  205 taactaagtgaaaaaatagtggtcacactcattttagttgcgtga 249  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||    
T  5321992 taactaagtggaaaaatagtggtcacgcgcattttagttgcgtga 5322036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 26493267 - 26493418
Alignment:
Q  106 ttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgaccattatgtttccagaatttatttggt 204  Q
    ||||||||||||||||||||||| | |||| |||||||||| | | |||||||||||| ||||||||||| ||||||||  ||| ||||||||||||| |    
T  26493267 ttttataccactttaaaaaattttacttaatcaaatatatggtctatgtgaccacattgttttagttgcgcgaccattaatttttcagaatttatttgat 26493366  T
Q  205 taactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||| || ||||||||| ||||| | || |||||||||||||||||||||    
T  26493367 taactaaatggaaaaatagttgtcacgcgca-tttagttgcgtgaccacattt 26493418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 24575842 - 24575962
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    |||||||||||||| |||| |||||||||||||||| | |||| ||||| ||| |||||||||  |||||| ||| |||||||||||||||||||||| |    
T  24575842 taccactttaaaaagtttcggttaaccaaatatatggtctgtgcgaccatattattttagttgtctgaccactatttttccagaatttatttggttaaat 24575941  T
Q  210 aagtgaaaaaatagtggtcac 230  Q
    |||||||||||||||||||||    
T  24575942 aagtgaaaaaatagtggtcac 24575962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 257
Target Start/End: Complemental strand, 5573992 - 5573807
Alignment:
Q  73 aatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatga-tatgtgtgaccacatttttt-agt 170  Q
    |||||| | ||||| |||||||||| ||||  ||||| ||||||| ||||| |||||||||||| ||||||||   | | |||||||||||||||| | |    
T  5573992 aatgataggtagactcctttaatgtgtacactcttttgtaccactctaaaagatttcagttaactaaatatatatgtctttgtgaccacatttttttaat 5573893  T
Q  171 tgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| ||| |||| | |||||||||||||||||||||| |||||||||||||||   |||||||||| | |||||||||||    
T  5573892 tgcgtgaccactatttttcaa-aatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttccatgaccacattt 5573807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 26914637 - 26914746
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaa 220  Q
    |||||||| || |||| ||||||||||| ||||||| |||||||||||||| |||||||| ||| |||| ||||||||||||||||| | |||| |||||    
T  26914637 aaaaatttaagctaactaaatatatgatttgtgtgatcacattttttagttacgtgaccactatttttcaagaatttatttggttaattgagtggaaaaa 26914736  T
Q  221 tagtggtcac 230  Q
    || |||||||    
T  26914737 taatggtcac 26914746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 1251450 - 1251545
Alignment:
Q  149 atgtgtgaccacattt-tttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagtt 243  Q
    |||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||  |||||||||||| | | ||||||||||    
T  1251450 atgtgtgaccacatttgtttagttgcgtgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcgcgcacattttagtt 1251545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 1240874 - 1240982
Alignment:
Q  149 atgtgtgaccacattt-tttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgt 247  Q
    |||||||| ||||||| |||||||| ||||||| ||| |||||| ||||||||||||||||||||||  |||||||||||||| | |||||||||| | |    
T  1240874 atgtgtgaacacatttgtttagttgtgtgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt-cat 1240972  T
Q  248 gaccacattt 257  Q
    ||||||||||    
T  1240973 gaccacattt 1240982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 6809959 - 6809822
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacattttt-tagttgcgtgaccattatgtttc-cagaatttatttggttaactaagtgaaaaa 219  Q
    |||||||||||||| |||||||||  ||||||||||||||||||| |||||| ||||  | ||| |||| || ||||||||||||||| ||| || ||||    
T  6809959 aaaatttcagttaatcaaatatatagtatgtgtgaccacatttttatagttgtgtgataactatttttctcataatttatttggttaattaaatggaaaa 6809860  T
Q  220 atagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||   |||||||| | || |||||||||    
T  6809859 atagtggtcacatgtattttagtcgagtaaccacattt 6809822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 29367076 - 29367137
Alignment:
Q  196 ttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacattt 29367137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 31596947 - 31596822
Alignment:
Q  133 taaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccatta-tgtttccagaatttatttggttaactaagtgaaaaaatagtggtcac 230  Q
    |||| ||||||||||| |||||||| | ||||||| ||||| |||||||||| | |||||| ||||||||||||||| |||||| |||||||||| | ||    
T  31596947 taactaaatatatgatttgtgtgactatatttttttagttgtgtgaccattagtttttccataatttatttggttaattaagtggaaaaatagtgattac 31596848  T
Q  231 actcattttagttgcgtgaccacattt 257  Q
    || || ||||||||  |||||||||||    
T  31596847 acgca-tttagttgtctgaccacattt 31596822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 1251680 - 1251575
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcg 174  Q
    ||||| |||||| | ||||||| |||| || ||| ||||||| |  ||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||    
T  1251680 gattggtagacatccttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatatgatttgtgagaccacattttttcagttgcg 1251581  T
Q  175 tgacca 180  Q
    ||||||    
T  1251580 tgacca 1251575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 31273516 - 31273644
Alignment:
Q  130 agttaaccaaatatatgatatgtgtgaccacatttt-ttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtc 228  Q
    ||||||||||||| || |||| ||||||||||| || |||||||||||| ||  || |||  ||||||||||||||||||| ||||||||||||| | ||    
T  31273516 agttaaccaaataaataatatatgtgaccacatcttgttagttgcgtgatcaccattttttaagaatttatttggttaacttagtgaaaaaatagcgttc 31273615  T
Q  229 acactcattttagttgcgtgaccacattt 257  Q
    ||   |||||||| ||| |||||| ||||    
T  31273616 acgtgcattttagctgcatgaccatattt 31273644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 15233318 - 15233259
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccac 253  Q
    |||||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||    
T  15233318 atttatttggttaattaagtgaaaaaatagtggtcatgcgcattttagttgcgtgaccac 15233259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 31596735 - 31596805
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    ||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||| |||||||| ||||    
T  31596735 taccactttgaaaaattacagttaatcaaatatatggtatgtgtgaccacattttttcagttgcgttacca 31596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 28700053 - 28700166
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccatta 183  Q
    |||| ||||||||| |||||| |||| || || | |||||||||||||||||| ||||||||| | | |||||||| ||||||| ||||| ||||   ||    
T  28700053 gacatctttaatgtgtacatcattttgtatcattctaaaaaatttcagttaactaaatatatggt-tatgtgaccatattttttcgttgcatgacttcta 28700151  T
Q  184 tgtttccagaattta 198  Q
    | |||||||||||||    
T  28700152 tttttccagaattta 28700166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 5573734 - 5573790
Alignment:
Q  125 atttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||    
T  5573734 atttcagttaaccaaatatatgatatatgtgactacattttttcaattgcgtgacca 5573790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 15233134 - 15233245
Alignment:
Q  87 acctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgt 186  Q
    ||||||||||| ||||||  ||  ||||| | | ||||||||||||||| |||||||||| | | || || ||||||||| |||| |||||||| ||| |    
T  15233134 acctttaatgtgtacatctcttcgtaccaatctgaaaaatttcagttaatcaaatatatggtctctgcgatcacatttttcagttacgtgaccactattt 15233233  T
Q  187 ttccagaattta 198  Q
    |||||| |||||    
T  15233234 ttccagcattta 15233245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 24537873 - 24538039
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaa---tttcagttaaccaaatatatgatatgtgtgaccacatttttta 168  Q
    ||||||| | || ||||| ||||||| |||| |  ||| ||||||| |||||||   ||||| ||||| ||||||||| |||| |||||||||||||||     
T  24537873 caatgatagatatacacccttaatgtatacaccaatttgtaccactctaaaaaaatatttcaattaactaaatatatggtatgagtgaccacattttttt 24537972  T
Q  169 g---ttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacac 232  Q
        ||| ||||||| ||  |||||| |||||||||||||||| |  || |||||||||||| ||||    
T  24537973 aattttgtgtgaccactaattttccaaaatttatttggttaaccatatggaaaaatagtggtaacac 24538039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 28700317 - 28700239
Alignment:
Q  107 tttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttt-ttagttgcgtgaccattat 184  Q
    ||||||||||| || ||||| | ||||||||||||||||| |  || |||||||||||| ||||||||||||| |||||    
T  28700317 tttataccactctagaaaatctaagttaaccaaatatatgttcagtatgaccacattttgttagttgcgtgacaattat 28700239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 33286130 - 33286227
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||| ||||||| |||| || ||| |||| || ||||||| || | ||||||||||||||| | || ||||||||||||||| | |||||||||||    
T  33286130 gacacccttaatgtgtacacccatttgtacccctctaaaaaaatttaattaaccaaatatatggtctgcgtgaccacattttttcaattgcgtgacca 33286227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 5322121 - 5322057
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattat 184  Q
    |||||||||| ||||||||||||||| | ||||||| |||||||||| | |||||||| ||||||    
T  5322121 aaaaatttcaattaaccaaatatatggtctgtgtgatcacattttttcaattgcgtgatcattat 5322057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 24576264 - 24576180
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccac 160  Q
    ||||| ||||||||  |||||| |||| || ||| ||||||| |  ||||||||| ||||||||||||||| | |||||||||||    
T  24576264 gattggtagacacccgtaatgtgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatatggtctgtgtgaccac 24576180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 24920134 - 24920075
Alignment:
Q  136 ccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaa 194  Q
    ||||||||||| |||||||||||||||||||| || |||||||||| ||| ||| |||||    
T  24920134 ccaaatatatgttatgtgtgaccacattttttaaggtgcgtgaccactattttttcagaa 24920075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 24919925 - 24919863
Alignment:
Q  133 taaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaa 194  Q
    |||||||||||||| | |||||||||||||||||| || |||||||||| ||| ||| |||||    
T  24919925 taaccaaatatatgttctgtgtgaccacattttttaaggtgcgtgaccactattttttcagaa 24919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 26493503 - 26493449
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||||||| |||||||||| ||||||||||||||  | ||||||| ||||||||||    
T  26493503 taccacttttaaaaatttcaattaaccaaatatat--tttgtgtgatcacatttttt 26493449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 32959628 - 32959587
Alignment:
Q  216 aaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||    
T  32959628 aaaaatagtggtcacacacattttagttgtgtgaccatattt 32959587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 38607031 - 38606927
Alignment:
Q  77 attgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgt 175  Q
    |||| |||||| | ||||||| |||| || ||| ||| ||| |  ||||||||||||||| | ||||||| | || ||||||||||||||| ||||||||    
T  38607031 attggtagacatccttaatgtgtacacccctttgtacaactctccaaaatttcagttaactacatatatggtttgcgtgaccacattttttcagttgcgt 38606932  T
Q  176 gacca 180  Q
     ||||    
T  38606931 tacca 38606927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 1966731 - 1966914
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagtt 171  Q
    ||||||| | |||||||| ||| ||| |||| |||||| ||||||| | |||| ||||||||||||||||||||| | ||||||||||||||||||||||    
T  1966731 caatgataggtagacacccttactgtatacacccttttgtaccactctgaaaa-tttcagttaaccaaatatatggtctgtgtgaccacattttttagtt 1966829  T
Q  172 gcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||| ||  |||||||||||||||||||||| |||||| ||||||||||||||| | || |||||||||||||||||||||    
T  1966830 gcgtgaccactagttttccagaatttatttggttaattaagtggaaaaatagtggtcacgcgca-tttagttgcgtgaccacattt 1966914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 42908741 - 42908595
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaacta 210  Q
    ||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||    
T  42908741 taccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacattttttagttgagtcaccactatttttccagaatttatttggttaacta 42908642  T
Q  211 agtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || | ||| ||||||||||| | |||||||||||||||| |||||||    
T  42908641 agaggaaacatagtggtcacgcgcattttagttgcgtgatcacattt 42908595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 19596996 - 19596809
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt--ag 169  Q
    ||||||| | ||||| || ||||||| ||||||||||| ||||  |||  ||||||||||||||||||||||||| || |||||||||||||||||  ||    
T  19596996 caatgataggtagacgcccttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacattttttttag 19596897  T
Q  170 ttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
     |||||||||| ||||||| |||||||||||||||||||||||||   ||||||| ||||  | ||||||||||||||||||||||||    
T  19596896 ctgcgtgaccactatgttttcagaatttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacattt 19596809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 84 - 257
Target Start/End: Original strand, 17633250 - 17633423
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccatta 183  Q
    |||||||||||||| ||||  | ||| |||||||   |||||||| ||||||||||||||||| | |||||||||||||||||||| ||| ||||||  |    
T  17633250 gacacctttaatgtgtacactcatttgtaccactccgaaaaattttagttaaccaaatatatggtctgtgtgaccacattttttagatgcatgaccacaa 17633349  T
Q  184 tgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    | | |||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| ||||    
T  17633350 tttgtccaaaatttatttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatattt 17633423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 9809250 - 9809101
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt---agttgcgtgaccattatgtttccagaatttatttggttaa 207  Q
    ||||||| || ||| ||| |||||||||| |||||| | ||||||||||||||||||   ||||||||||||||| | |||||| || ||||||||||||    
T  9809250 taccactctagaaattttaagttaaccaagtatatggtctgtgtgaccacatttttttttagttgcgtgaccattttttttccataaattatttggttaa 9809151  T
Q  208 ctaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||| || ||||||||||||||| | ||||| ||||||||||| ||||||    
T  9809150 ctaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacattt 9809101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 14351236 - 14351091
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttt-tagttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    ||||||| | ||||| || ||||||||||||||||| | |||||||||| |||||| |||||||||||||| ||| ||  || |||||||||||||||||    
T  14351236 taccactctcaaaaaatttagttaaccaaatatatggtttgtgtgaccatatttttctagttgcgtgaccactattttgacaaaatttatttggttaact 14351137  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttgcgtgaccacat 255  Q
    ||||| ||||||||||||||    |||||||||||||||| |||||    
T  14351136 aagtggaaaaatagtggtcatggacattttagttgcgtgatcacat 14351091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 24669347 - 24669211
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    ||||||| | |||||||| |||||| |||||||||| | |||||||||||||||||| ||||||||||||| |||           ||||||||||||||    
T  24669347 taccactctgaaaaatttaagttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat-----------ttatttggttaact 24669259  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||    
T  24669258 aagtgaaaaaatagtggtcacacgaattttagttgcgtgaccatattt 24669211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 9810937 - 9810787
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt--agttgcgtgacca--ttatgtttccagaatttatttggtta 206  Q
    ||||||| || ||| ||| ||||||||||||||||| | ||||||||||||||||||  |||||||||||||  || | ||| || || |||||||||||    
T  9810937 taccactctagaaattttaagttaaccaaatatatggtctgtgtgaccacattttttttagttgcgtgaccaattttttttttcataaattatttggtta 9810838  T
Q  207 actaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||| || |||||||| |||||| | ||||| ||||||||||| ||||||    
T  9810837 actaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacattt 9810787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 17633510 - 17633440
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  17633510 taccactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacattttttcagttgcgtgacca 17633440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 55666993 - 55666920
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattat 184  Q
    |||||||||  ||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||    
T  55666993 taccactttcgaaaatttcagttaactaaatatatggtctgtgtgaccacatttttcagttgcgtgaccattat 55666920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 16583742 - 16583635
Alignment:
Q  139 aatatatgatatgtgtgaccacattttt-tagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcatt 237  Q
    |||||||| | | ||||| ||||||||| |||||||||||| | ||| || ||| ||||||||||||||| |||||| ||||||||||||||| | ||||    
T  16583742 aatatatgttttatgtgatcacatttttgtagttgcgtgactactattttaccataatttatttggttaattaagtggaaaaatagtggtcacgcgcatt 16583643  T
Q  238 ttagttgc 245  Q
    ||||||||    
T  16583642 ttagttgc 16583635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 33179775 - 33179841
Alignment:
Q  191 agaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||    
T  33179775 agaatttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacattt 33179841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 16583501 - 16583606
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcg 174  Q
    ||||| |||||||| ||||||  ||||||| ||| ||||||| |  ||||||||||||||||||||||||| |   |||||||||||||||| |||||||    
T  16583501 gattggtagacacccttaatgcgtacatccctttgtaccactctcgaaaatttcagttaaccaaatatatggttgatgtgaccacattttttcagttgcg 16583600  T
Q  175 tgacca 180  Q
    ||||||    
T  16583601 tgacca 16583606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 35544376 - 35544501
Alignment:
Q  131 gttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcac 230  Q
    ||||| |||| ||||| | |||||||||| ||||||||||||   ||  | ||| | |||| ||||||||| ||||| |||||| |||||||||| ||||    
T  35544376 gttaaacaaaaatatggtttgtgtgaccatattttttagttgtacgattactatttatccaaaatttatttagttaattaagtggaaaaatagtgatcac 35544475  T
Q  231 actcattttagttgcgtgaccacattt 257  Q
    || ||||| ||||||||||||||||||    
T  35544476 acgcattt-agttgcgtgaccacattt 35544501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 33249634 - 33249698
Alignment:
Q  193 aatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| ||||||| ||| ||||||||||||||||| |||||||  |||||||||||||||    
T  33249634 aatttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacattt 33249698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 257
Target Start/End: Original strand, 8740725 - 8740872
Alignment:
Q  112 accactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatg---tttccagaatttatttggttaa 207  Q
    |||||| | |||||||  |||||| |||||||||| | | |||||||||||||||| ||||| ||||||| ||     |||||| ||||||||| |||||    
T  8740725 accactctgaaaaattcaagttaatcaaatatatggtttatgtgaccacatttttttagttg-gtgaccactactacttttccataatttatttagttaa 8740823  T
Q  208 ctaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||  ||||||||||||||| | |||||||| | |||||||||||||    
T  8740824 ctaagtagaaaaatagtggtcacgcgcattttag-tacgtgaccacattt 8740872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 9808987 - 9809084
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||| ||||| | |||| |||||| |||| || | ||||| |||||||||| ||||||||| | || ||||||||||||||| |||||||||||||    
T  9808987 gacacccttaatatgtacacccttttgtaccgctatgaaaaaattcagttaactaaatatatggtctgcgtgaccacattttttcagttgcgtgacca 9809084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 9810673 - 9810770
Alignment:
Q  84 gacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||| ||||| | |||| |||||| ||||||| | |||||||||||||||  ||||||||| | || || |||||||||||| |||||||||||||    
T  9810673 gacacccttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatatggtttgcgttaccacattttttcagttgcgtgacca 9810770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 35544584 - 35544532
Alignment:
Q  115 actttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  35544584 acttttaaaaatttcagttaatcaaatatatggtatgtgtgatcacatttttt 35544532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 24669074 - 24669201
Alignment:
Q  73 aatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatat-atgatatgtgtgaccacatttttt-agt 170  Q
    |||||||| |||||||| ||| |   ||||||| ||| || || | || ||||||| ||||| |||||||| ||| |||||||||||||||||||| |||    
T  24669074 aatgattggtagacacccttatttcgtacatccatttgtatcattctagaaaatttaagttagccaaatattatggtatgtgtgaccacattttttcagt 24669173  T
Q  171 tgcgtgaccattatgtttccagaattta 198  Q
    |||||||||| ||| ||| ||| |||||    
T  24669174 tgcgtgaccactattttttcagcattta 24669201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 2433842 - 2433765
Alignment:
Q  155 gaccacattttttagttgcgtgaccattatgtttc--cagaatttatttggttaactaagtgaaaaaatagtggtcac 230  Q
    ||||| ||||||||||||| | |||| ||| |||   || |||||||||||||||| |||||||||||||||||||||    
T  2433842 gaccatattttttagttgcattaccactattttttttcataatttatttggttaacaaagtgaaaaaatagtggtcac 2433765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 55666844 - 55666903
Alignment:
Q  193 aatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccac 253  Q
    |||||||||| ||||||||||| |||||||||||||||   |||||||||| |||||||||    
T  55666844 aatttatttgcttaactaagtggaaaaatagtggtcacgaacattttagtt-cgtgaccac 55666903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 19596685 - 19596776
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||| |||||| ||||||||| |||| || ||| ||||||| | |||||| || ||| |||||||||||| |  | |||||||||||||||    
T  19596685 gattgatagacatctttaatgtgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggtcagcgtgaccacatttttt 19596776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 33249568 - 33249622
Alignment:
Q  106 ttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccac 160  Q
    |||||||||| | ||||||||| ||||||| ||||||| || |||||||||||||    
T  33249568 ttttataccattctaaaaaattccagttaatcaaatatgtggtatgtgtgaccac 33249622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 1966979 - 1966931
Alignment:
Q  134 aaccaaatatatgatatgtgtgaccacatt--ttttagttgcgtgacca 180  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  1966979 aaccaaatatatgacatatgtgaccacattttttttagttgcgtgacca 1966931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 13312778 - 13312625
Alignment:
Q  105 cttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttgg 203  Q
    ||||| ||||||| | |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  13312778 cttttgtaccactctgaaaaatttcagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgaccactatttttccataatttatttgg 13312679  T
Q  204 ttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||| ||||||||| | ||| | ||||||||||||||||||||||||    
T  13312678 ttaactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacattt 13312625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 42034959 - 42034783
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||| ||||||||  ||||||| ||| ||||||| ||||||||||||||| | |||||||||| ||||||| | |||||||||| |||||||||||||    
T  42034959 tagacatctttaatgcgtacatccctttgtaccactctaaaaaatttcagttgatcaaatatatggtatgtgtaatcacatttttttagttgcgtgacca 42034860  T
Q  181 ttatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
     ||  |||||| |||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||    
T  42034859 ctagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacattt 42034783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 22169631 - 22169484
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    ||||||| | |||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||    
T  22169631 taccactctgaaaatttttagttaaccaaatttatgatatgtgtgaccacatttttttagttgcgtgaccattattttttcaaaatttatttggttaact 22169532  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    | ||  ||||||||||||||| | ||||||||||||||||||||||||    
T  22169531 acgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacattt 22169484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 35922903 - 35922759
Alignment:
Q  114 cactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttta-gttgcgtgaccattatgtttccagaatttatttggttaactaag 212  Q
    |||||| |||||||| |||||||||||| |||| | |||| ||||| |||||||| ||||| |||||| ||| ||| ||||||||||||||||||||||     
T  35922903 cactttgaaaaatttaagttaaccaaatttatggtctgtgggaccatattttttaagttgcatgaccactattttttcagaatttatttggttaactaaa 35922804  T
Q  213 tgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || |||||||||||||| || ||||||||||||||||||||||||    
T  35922803 tggaaaaatagtggtcatacgcattttagttgcgtgaccacattt 35922759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 38521914 - 38522049
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaa 220  Q
    ||||||||| |||||| |  |||||||| |||||||| |||||||||||||||||||||||||  |||| ||||||||||| |||||||||||| |||||    
T  38521914 aaaaatttcggttaactacgtatatgatctgtgtgactacattttttagttgcgtgaccattagttttctagaatttatttagttaactaagtgtaaaaa 38522013  T
Q  221 tagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| | ||||||| | ||||||||||||||    
T  38522014 tagtggtcacgcgcatttta-tcgcgtgaccacattt 38522049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 19621419 - 19621551
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacattttt-tagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaa 220  Q
    ||||||| | ||||||||||||||  |  |||| ||||||||||| ||||||||| | || ||| ||||||||||||||||||||||||||||| |||||    
T  19621419 aaaatttaacttaaccaaatatattgtcagtgtaaccacatttttgtagttgcgtaatcactatttttccagaatttatttggttaactaagtggaaaaa 19621518  T
Q  221 tagtggtcacactcattttagttgcgtgaccac 253  Q
    |||||||||| | ||||||||||||||||||||    
T  19621519 tagtggtcacgcacattttagttgcgtgaccac 19621551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 31189747 - 31189605
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccaca--ttttttagttgcgtgaccattatgtttccagaatttatttggttaac 208  Q
    |||||||||||||||||||||||||||||||||||| |     ||||||||  ||||||||||| || || | ||||||||||||||||||||| |||||    
T  31189747 taccactttaaaaaatttcagttaaccaaatatatggt-----tgaccacaatttttttagttgtgtaactactatgtttccagaatttatttgattaac 31189653  T
Q  209 taagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
     |||||  |||||||||||||||  |||||||||||||||| |||||||    
T  31189652 caagtg-gaaaatagtggtcacaaacattttagttgcgtgatcacattt 31189605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 257
Target Start/End: Original strand, 33958878 - 33959062
Alignment:
Q  73 aatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agtt 171  Q
    |||||| | |||||||| ||||| | || |||||||  ||||||| | |||||||||| ||||||||||||||| | | ||| | |||||||||| || |    
T  33958878 aatgataggtagacacccttaatatgtatatcctttg-taccactctgaaaaatttcacttaaccaaatatatggtctatgtaatcacatttttttagct 33958976  T
Q  172 gcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || ||||||  || ||||||||||||||||||| ||||||||| |||||||||||| || |  |||||||||||||||||| ||||    
T  33958977 gcatgaccacaatttttccagaatttatttggtcaactaagtggaaaaatagtggttactcggattttagttgcgtgaccatattt 33959062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 15221779 - 15221616
Alignment:
Q  70 accaatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-a 168  Q
    ||||||||| |  ||||||||||||||| ||||  | ||| || || | | |||||||||||||||| ||||||||| | |||||||||||||||||| |    
T  15221779 accaatgataggcagacacctttaatgtgtacactcctttgtatcattctgaaaaatttcagttaactaaatatatggtctgtgtgaccacattttttta 15221680  T
Q  169 gttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacac 232  Q
     ||| ||||||| ||| ||| |||||||||||| ||||| |||||| ||||| |||||||||||    
T  15221679 attgtgtgaccactattttttcagaatttatttagttaattaagtggaaaaagagtggtcacac 15221616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 36169302 - 36169411
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagtt 171  Q
    ||||||| | |||||||  ||||||| ||| ||  ||| ||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||    
T  36169302 caatgataggtagacactcttaatgtgtacttctctttgtaccactttgaaaaattttagttaaccaaatatatggtaggtgtgaccacattttttagtt 36169401  T
Q  172 gcgtgaccat 181  Q
    ||||||||||    
T  36169402 gcgtgaccat 36169411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 30045994 - 30045885
Alignment:
Q  138 aaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcatt 237  Q
    ||||||||| |||||||||| | |||||| ||||| ||||||||||| ||  | |||||||||||||||| ||| || ||||||||||||||| |  |||    
T  30045994 aaatatatggtatgtgtgactatatttttcagttgtgtgaccattattttcaccgaatttatttggttaattaaatggaaaaatagtggtcacgcgtatt 30045895  T
Q  238 ttagttgcgt 247  Q
    ||||||||||    
T  30045894 ttagttgcgt 30045885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 36169536 - 36169432
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcg 174  Q
    |||||||||||| ||||||||| |||||| ||||| |||||| | ||||||||||| | | |||||||||| |||||||||||||||| ||| |||||||    
T  36169536 gattgctagacatctttaatgtatacatc-ttttacaccactctcaaaaatttcagctgatcaaatatatggtatgtgtgaccacattctttcagttgcg 36169438  T
Q  175 tgacca 180  Q
    ||||||    
T  36169437 tgacca 36169432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 2477400 - 2477312
Alignment:
Q  139 aatatatgatatgtgtgaccacattt-tttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtgg 226  Q
    ||||| |||||||||| ||||||||| |||||||||||| ||| ||| ||| ||||||||||||||||||||||||  |||||||||||    
T  2477400 aatatgtgatatgtgtaaccacatttatttagttgcgtggccactatttttacagaatttatttggttaactaagtcgaaaaatagtgg 2477312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 19621631 - 19621557
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacattttt-tagttgcgtgaccattatgtttccagaa 194  Q
    |||||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||| ||| |||||||||    
T  19621631 aaaaatttcagttaaccaaatatatggtatgtgtgaccacatttttccatttgcgtgaccactatttttccagaa 19621557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 43262898 - 43262816
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattt 164  Q
    |||||||| ||||||| |||| || ||| ||| ||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  43262898 tagacacccttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacattt 43262816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 35922619 - 35922704
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    |||||||  ||||||| ||||||| ||| || |||| | ||||||||||||||| |||||||||| ||||||||||||||||||||    
T  35922619 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatatggtatgtgtgaccacatttttt 35922704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 43262708 - 43262768
Alignment:
Q  197 tatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  43262708 tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacattt 43262768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 30704398 - 30704461
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||| | ||||||||||    
T  30704398 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattt 30704461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 31189488 - 31189571
Alignment:
Q  83 agacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttt 166  Q
    ||||||||||||| | |||| | |||| ||||||| |  ||||||||||||||||||||||||  |||||||||||||||||||    
T  31189488 agacacctttaatatgtacaacattttgtaccactctcgaaaatttcagttaaccaaatatatagtatgtgtgaccacattttt 31189571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 13312504 - 13312607
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgt 175  Q
    ||||| |||| ||||||||||| |||| |||||| ||| | |||  ||||||||| ||||||||||||||| | | ||||| ||||||||| ||||| ||    
T  13312504 gattggtagatacctttaatgtgtacacccttttgtactattttcgaaaatttcaattaaccaaatatatggtctatgtgaacacatttttcagttgggt 13312603  T
Q  176 gacc 179  Q
    ||||    
T  13312604 gacc 13312607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 7155998 - 7156076
Alignment:
Q  89 ctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||||||| |||||| |||| |||||||||| |||||||||||||| |||||||||| | | | ||| ||||||||||    
T  7155998 ctttaatgtgtacatctttttgtaccactttagaaaatttcagttaatcaaatatatggtttatatgatcacatttttt 7156076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 22169362 - 22169467
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcg 174  Q
    ||||| |||||||| ||||||| |||| ||| || || || |||  ||||||||||||||| |||||||||  || ||||| |||||||||| |||||||    
T  22169362 gattggtagacacccttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatatggaatatgtgatcacattttttcagttgcg 22169461  T
Q  175 tgacca 180  Q
    ||||||    
T  22169462 tgacca 22169467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 43461688 - 43461777
Alignment:
Q  162 ttttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgacc 251  Q
    ||||| ||||| ||||| | ||| ||| |||||||||||||||| |||||||| |||||||||||| ||    |||||||||||||||||    
T  43461688 tttttcagttgtgtgacaactattttttcagaatttatttggtttactaagtggaaaaatagtggttacgtgaattttagttgcgtgacc 43461777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 622578 - 622500
Alignment:
Q  162 ttttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagt 242  Q
    ||||||| |||||||||  |||| ||||||||||||||||| |||| |||||  |||||||||| |||| | |||||||||    
T  622578 ttttttaattgcgtgacacttatttttccagaatttatttgattaagtaagt--aaaaatagtgatcacgcacattttagt 622500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 7156182 - 7156119
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||| |||||| ||||||| ||||||| |  |||||||||||| || |||||||    
T  7156182 atttatttggttaattaagtggaaaaataatggtcacgcatattttagttgcgcgatcacattt 7156119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 2477255 - 2477299
Alignment:
Q  135 accaaatatatgatatgtgtgaccacatttt-ttagttgcgtgac 178  Q
    |||||||||||| | |||||||||||||||| |||||||||||||    
T  2477255 accaaatatatggtttgtgtgaccacattttgttagttgcgtgac 2477299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 3823815 - 3823680
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaa 220  Q
    ||||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||||    
T  3823815 aaaaattccagttaaccaaatatattgtctgtgtgaccacgttttttagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaa 3823716  T
Q  221 tagtggtcacactcattttagttgcgtgaccacattt 257  Q
     ||||||||||| ||||||||||||||||||| ||||    
T  3823715 -agtggtcacacgcattttagttgcgtgaccatattt 3823680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 82 - 256
Target Start/End: Original strand, 26308546 - 26308721
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgacca 180  Q
    |||||||||||||| | ||||   |||| || |||||| |||||| ||||||||| ||||||||| | |||||||||||||| ||||||||| |||||||    
T  26308546 tagacacctttaatatgtacacttttttgtatcactttgaaaaatatcagttaactaaatatatggtttgtgtgaccacattgttttagttgtgtgacca 26308645  T
Q  181 ttatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacatt 256  Q
     ||  |||||||||||||||||||||| |||||| ||||||||||||||| | ||||||| |||||||||||||||    
T  26308646 ctaattttccagaatttatttggttaagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacatt 26308721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 3786125 - 3785990
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaa 220  Q
    ||||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||||    
T  3786125 aaaaattccagttaaccaaatatattgtctgtgtgaccacgttttttagttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaa 3786026  T
Q  221 tagtggtcacactcattttagttgcgtgaccacattt 257  Q
     ||||||||| | ||||||||||||||||||| ||||    
T  3786025 -agtggtcacgcgcattttagttgcgtgaccatattt 3785990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 42637865 - 42638038
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgaccat 181  Q
    |||||||| |||||||  |||||| ||| |||||||   |||||||||| |||||||||||||| || ||||||||| ||| |||||||||  ||||||     
T  42637865 tagacacccttaatgtgcacatccctttgtaccactg--aaaaatttcaattaaccaaatatattatttgtgtgaccgcatattttagttgtctgaccac 42637962  T
Q  182 tatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||| ||| ||||||||||||||||||||||||  |||||||||||| || | ||||||||||||||||||||||||    
T  42637963 tattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacattt 42638038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 5342040 - 5341903
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaa 219  Q
    ||||||||||||||| | |||||||| | |||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||| ||||    
T  5342040 aaaaatttcagttaatcgaatatatggtctgtgtgaccacatttttttagttgtgtaaccattatgttttcagaatttatttggttaactaagtggaaaa 5341941  T
Q  220 atagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| |   ||||||||||  |||||||||||    
T  5341940 atagtggtcatatgtattttagttgtatgaccacattt 5341903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 31545811 - 31545643
Alignment:
Q  90 tttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgttt 188  Q
    |||||| | |||||| |||| || |||| | ||||||||||| ||||| |||||||| | | |||||||||||||||| ||||| ||||||| ||| |||    
T  31545811 tttaatatgtacatctttttgtatcactctgaaaaatttcaggtaacctaatatatggtctatgtgaccacatttttttagttgtgtgaccactattttt 31545712  T
Q  189 ccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||| |||||||||||  ||||||||||||||  | ||||||||||| ||||||||||||    
T  31545711 ccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacattt 31545643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 11501448 - 11501309
Alignment:
Q  107 tttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccaca-ttttttagttgcgtgaccattatgtttccagaatttatttggtt 205  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| | || ||| |||  | |||||||||||||    
T  11501448 tttataccactttagaaaatttaagttaaccaaatatatgatctgtgtgaccgcagttttttagttgcgttagcactatttttttaaaatttatttggtt 11501349  T
Q  206 aactaagtgaaaaaatagtggtcacactcattttagttgc 245  Q
    |||||| || ||||||||||||||| | ||||||||||||    
T  11501348 aactaattggaaaaatagtggtcacgcacattttagttgc 11501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 257
Target Start/End: Complemental strand, 22432524 - 22432357
Alignment:
Q  91 ttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttc 189  Q
    ||||||| |||| |||||| || |||||| |||||||| ||| || |||||||||| | |||||||| ||||||||| |||||| |||||| ||| |||     
T  22432524 ttaatgtgtacacccttttgtagcactttgaaaaatttgagtaaatcaaatatatggtctgtgtgactacatttttttagttgcatgaccactatttttt 22432425  T
Q  190 cagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || |||||||||||| ||||| ||| ||||||||||| ||||| |||||||||||  |||||||||||    
T  22432424 cataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacattt 22432357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 257
Target Start/End: Complemental strand, 19280409 - 19280225
Alignment:
Q  73 aatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttta-gtt 171  Q
    |||||| | |||||||| ||||||| |||| || ||| ||||||| | |||| ||| |||||| |||||||||| | |||||||| |||||||||| ||     
T  19280409 aatgataggtagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtctgtgtgacaacattttttaagtg 19280310  T
Q  172 gcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    | ||||||| ||  ||| || |||||||||||||||||||||| |||| |||||||||| |  |||||||||||||||||||||||    
T  19280309 gtgtgaccactaatttttcaaaatttatttggttaactaagtggaaaa-tagtggtcacgcgaattttagttgcgtgaccacattt 19280225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 4169053 - 4169187
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaa 219  Q
    |||||||||||||||||||   |||| |||| |||||| |||||||| |||||| |||| | ||| ||| |||||||||||||||||||||| || ||||    
T  4169053 aaaaatttcagttaaccaa---tatggtatgcgtgacctcattttttcagttgcatgactactattttttcagaatttatttggttaactaaatggaaaa 4169149  T
Q  220 atagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||| | |||||||||||||| |||||||||    
T  4169150 atagtggtcacgcacattttagttgcgttaccacattt 4169187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 19624459 - 19624334
Alignment:
Q  132 ttaaccaaatatatgatatg-tgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtca 229  Q
    ||||||||||||||| |||| || ||||||||||||| ||||| |||||||  || |||||||||||||| |||||||||||||| ||||||||||||||    
T  19624459 ttaaccaaatatatggtatgatgcgaccacatttttttagttgtgtgaccacaatttttccagaatttatgtggttaactaagtggaaaaatagtggtca 19624360  T
Q  230 cactcattttagttgcgtgaccacat 255  Q
    |   ||||||||||| ||| ||||||    
T  19624359 cgtgcattttagttgggtggccacat 19624334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 27707837 - 27707700
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacat-tttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaa 219  Q
    |||||||| |||||| |||||||||| | | |||||||| || ||||| ||||| || ||| ||| ||||||||||||||||||||||  ||||||||||    
T  27707837 aaaaatttaagttaatcaaatatatggtctctgtgaccatatatttttggttgcatgtccactatttttccagaatttatttggttaatcaagtgaaaaa 27707738  T
Q  220 atagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||  | ||||||||||| | ||||||||||    
T  27707737 atagtggtcatgcacattttagttgtgcgaccacattt 27707700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 11510100 - 11509989
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt---agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaa 217  Q
    |||||||||||||||  |||||||| ||||||||||||| |||||||   |||||||||| || ||| || | ||||||||||| ||||||||| |||||    
T  11510100 aaaaatttcagttaaataaatatataatatgtgtgaccatatttttttttagttgcgtgagcactattttcctagaatttatttagttaactaattgaaa 11510001  T
Q  218 aaatagtggtca 229  Q
    ||||||||||||    
T  11510000 aaatagtggtca 11509989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 18733677 - 18733581
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgac 178  Q
    |||||||||||||||| |||| || ||||||||| | | |||||||| ||||||| ||||||||| |||| |||||||||||| |||||||||||||    
T  18733677 tagacacctttaatgtgtacacccctttataccattctgaaaaatttaagttaactaaatatatggtatgggtgaccacatttcttagttgcgtgac 18733581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 39126329 - 39126191
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccaca-ttttttagttgcgtgaccatta--tgtttccagaatttatttggttaactaagtgaaa 217  Q
    |||||||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||| | ||  | |||  | |||||||||||||||||||||| ||    
T  39126329 aaaaatttaagttaaccaaatatatgatctgtgtgacaacatttttttagttgcgtgactactatttttttttaaaatttatttggttaactaagtggaa 39126230  T
Q  218 aaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||| || | | | |||||||||||| |||||||||    
T  39126229 aaatagtgatcgcgcgc-ttttagttgcgtaaccacattt 39126191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 1705605 - 1705752
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttt-ttagttgcgtgaccattatgtttccagaatttatttggttaact 209  Q
    ||||||| | |||||||| |||| || ||||||||| | |||||||  | ||||| |||||||  |||||| ||  ||||||||| ||||||||||||||    
T  1705605 taccactctgaaaaatttaagtttactaaatatatggtttgtgtgattatatttttttagttgtatgaccactagttttccagaaattatttggttaact 1705704  T
Q  210 aagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||| | ||||||||||||||| | |||||||||||| |||||| ||||    
T  1705705 aaggggaaaaatagtggtcacgcgcattttagttgcatgaccatattt 1705752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 44080420 - 44080284
Alignment:
Q  121 aaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaa 219  Q
    ||||||||||||||| |||  ||||  | ||||| |||||||||||| ||||| | ||||| ||| |||||| ||||| |||||||||||||||| ||||    
T  44080420 aaaaatttcagttaatcaaggatatagtctgtgttaccacatttttttagttgtgcgaccactatttttccaaaatttttttggttaactaagtggaaaa 44080321  T
Q  220 atagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||| ||| | ||||||||||  ||||||||||||    
T  44080320 atagtgggcacgcacattttagtt-tgtgaccacattt 44080284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 34627245 - 34627381
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacatttttta-gttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaa 220  Q
    ||||||| |||||| |||||||||  | | |||||||| |||||||| |||||||||| | ||| |||   |||||||||||||||||||| || |||||    
T  34627245 aaaatttaagttaatcaaatatatagtttctgtgaccatattttttaagttgcgtgactactatttttttcgaatttatttggttaactaaatggaaaaa 34627344  T
Q  221 tagtggtcacactcattttagttgcgtgaccacattt 257  Q
    || |||| |||   |||||||||||||||||||||||    
T  34627345 taatggttacatgtattttagttgcgtgaccacattt 34627381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 1705863 - 1705769
Alignment:
Q  85 acacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgcgtgacca 180  Q
    ||||| ||||||| ||||||||| | || || | |||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||    
T  1705863 acacccttaatgtgtacatccttgtgtatcattgtaaaaaatttcagttaaccaaatacatgatatgtgtgatcata-tttttagttgcgtgacca 1705769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 42481422 - 42481327
Alignment:
Q  162 ttttttagttgcgtgaccattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| | |||||||||| ||| ||||||||||||||||||||||||  ||||||| |||||||   ||||||||||| ||||||| ||||    
T  42481422 ttttttagttacatgaccattattttttcagaatttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccatattt 42481327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 3823562 - 3823661
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||||| ||||||| |||| || ||| ||||||| |  |||||||||||||||||| |||||| | ||||||||||||||||||  ||||||||||||    
T  3823562 tagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgaccacattttttctgttgcgtgacca 3823661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 27335307 - 27335465
Alignment:
Q  89 ctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgaccattatgtt 187  Q
    ||||||||| |||| || ||| ||||| | | |||| ||| ||||||||||  ||||| |||||||||||||||||||| ||||||||||| | |||       
T  27335307 ctttaatgtgtacacccctttgtaccattctgaaaattttgagttaaccaataatatggtatgtgtgaccacatttttttagttgcgtgacaactat--- 27335403  T
Q  188 tccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
            ||||||||||||||||||| |||||||||||||||    |||||||||| ||||||||||||    
T  27335404 --------ttatttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacattt 27335465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 3785867 - 3785958
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    ||||| |||||||| ||||||| |||| || ||| ||||||| |  |||||||||||||||||| | |||| | ||||||||||||||||||    
T  3785867 gattggtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgaccacatttttt 3785958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 27365008 - 27365071
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||| |||||| |||||||||||||||||  ||||||| |||||||| ||||||    
T  27365008 atttatttggttaattaagtggaaaaatagtggtcacacgtattttagctgcgtgactacattt 27365071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 11509808 - 11509917
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcg 174  Q
    ||||| |||||||  ||||||| |||| || ||| ||||||| | ||||||||||  |||||||||||  ||| |||||||||||||||||| | |||||    
T  11509808 gattgatagacacacttaatgtgtacacccctttgtaccactcttaaaaatttcaaataaccaaatatgcgatttgtgtgaccacattttttcacttgcg 11509907  T
Q  175 tgaccattat 184  Q
    ||||| ||||    
T  11509908 tgacctttat 11509917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 9710739 - 9710802
Alignment:
Q  190 cagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccaca 254  Q
    ||||||||||||||||||||||||| |||||||||||||| | |   ||||||||||||||||||    
T  9710739 cagaatttatttggttaactaagtggaaaaatagtggtca-agtgtatttagttgcgtgaccaca 9710802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 27040774 - 27040686
Alignment:
Q  93 aatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccac-attttttagttgcgtgacca 180  Q
    ||||| ||||| | ||| ||| ||| || |||||||| |||||||||||||||||| ||||||| ||| |||||| |||||||||||||    
T  27040774 aatgtgtacattcctttgtactactctagaaaatttcggttaaccaaatatatgatctgtgtgatcacaatttttcagttgcgtgacca 27040686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 44080196 - 44080267
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt--agttgcgtgacca 180  Q
    ||||||| | || |||||||||||||||||||||| || |||||||||| |||||||  |||||||||||||    
T  44080196 taccactctgaacaatttcagttaaccaaatatataatctgtgtgaccatattttttgcagttgcgtgacca 44080267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 27326047 - 27326110
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||| |||||| || || ||||||||||||||||   |||||||||||||||||||||||    
T  27326047 atttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacattt 27326110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 27332284 - 27332347
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||| |||||| || || ||||||||||||||||   |||||||||||||||||||||||    
T  27332284 atttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacattt 27332347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 42638114 - 42638055
Alignment:
Q  122 aaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    ||||||||||||||| ||||||||| ||| | |||||||||||||| |||||||||||||    
T  42638114 aaaatttcagttaactaaatatatggtatatatgaccacattttttcagttgcgtgacca 42638055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 23163837 - 23163787
Alignment:
Q  203 gttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccac 253  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  23163837 gttaactaagtgaagaaatagtggtcacgtacattttagttgcgtgaccac 23163787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 27079460 - 27079394
Alignment:
Q  115 actttaaaaaatttcagttaaccaaatatatgatatgtgtgaccac-attttttagttgcgtgacca 180  Q
    |||||| |||||||| |||||||||||||||| | ||||||||||| |||||| |||||| ||||||    
T  27079460 actttagaaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgacca 27079394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 27085257 - 27085191
Alignment:
Q  115 actttaaaaaatttcagttaaccaaatatatgatatgtgtgaccac-attttttagttgcgtgacca 180  Q
    |||||| |||||||| |||||||||||||||| | ||||||||||| |||||| |||||| ||||||    
T  27085257 actttagaaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgacca 27085191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 33488449 - 33488340
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacat-tttttagt 170  Q
    ||||||| | |||||||||||||||| || |  | ||||||  ||| | |||||||| ||||||| ||||||||| ||||| ||||| ||| ||||||||    
T  33488449 caatgatagttagacacctttaatgtgtatactcatttatataactctgaaaaatttaagttaactaaatatatggtatgtatgaccgcatatttttagt 33488350  T
Q  171 tgcgtgacca 180  Q
    |||| |||||    
T  33488349 tgcgcgacca 33488340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 13358110 - 13358174
Alignment:
Q  193 aatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||||||||||| ||| |||||||||||| || | ||||||| ||| ||||||| ||||    
T  13358110 aatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatattt 13358174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 19280111 - 19280208
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcgtgacca 180  Q
    |||||||| |||| || |||| || ||| |||||||  |||| |||| ||||||||||||||||| | || ||||||||||||||| || ||||||||||    
T  19280111 tagacacccttaaagtgtacacccctttgtaccact--aaaatattttagttaaccaaatatatggtctgagtgaccacattttttcagatgcgtgacca 19280208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 27079314 - 27079378
Alignment:
Q  193 aatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| ||||||||||| ||||||  ||||||| | |||||||| | |||||||||||||    
T  27079314 aatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattt 27079378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 27085111 - 27085175
Alignment:
Q  193 aatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||||| ||||||||||| ||||||  ||||||| | |||||||| | |||||||||||||    
T  27085111 aatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattt 27085175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 9710922 - 9710852
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatg 146  Q
    ||||| |||| ||| ||||| | |||| || ||| ||||||| | ||||||||||||||||||||||||||    
T  9710922 gattggtagaaacccttaatatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatatg 9710852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 11501248 - 11501310
Alignment:
Q  111 taccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacattttttagttgc 173  Q
    ||||||| | |||| |||||  |||||||||||||| | ||||||||||||||||| ||||||    
T  11501248 taccactctgaaaattttcaaataaccaaatatatggtctgtgtgaccacatttttcagttgc 11501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 27326278 - 27326158
Alignment:
Q  73 aatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agtt 171  Q
    |||||||| || ||||  ||||||| |||| || ||| ||||| ||||  ||| |||| |||| |||||||||| | ||| ||||||||||||||  |||    
T  27326278 aatgattggtaaacactcttaatgtgtacacccctttctaccattttaggaaacttcaattaatcaaatatatggtttgtctgaccacattttttcggtt 27326179  T
Q  172 gcgtgaccattatgtttccag 192  Q
    |||||| || ||| |||||||    
T  27326178 gcgtgatcactatttttccag 27326158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 27332515 - 27332395
Alignment:
Q  73 aatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agtt 171  Q
    |||||||| || ||||  ||||||| |||| || ||| ||||| ||||  ||| |||| |||| |||||||||| | ||| ||||||||||||||  |||    
T  27332515 aatgattggtaaacactcttaatgtgtacacccctttctaccattttaggaaacttcaattaatcaaatatatggtttgtctgaccacattttttcggtt 27332416  T
Q  172 gcgtgaccattatgtttccag 192  Q
    |||||| || ||| |||||||    
T  27332415 gcgtgatcactatttttccag 27332395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 27707610 - 27707670
Alignment:
Q  107 tttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt 167  Q
    |||||| || ||||||||| |||| |||| |||||||||| | |||||| |||||||||||    
T  27707610 tttatatcattttaaaaaaattcaattaatcaaatatatggtttgtgtgcccacatttttt 27707670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 55165143 - 55165099
Alignment:
Q  186 tttccagaatttatttggttaactaagtgaaaaaatagtggtcac 230  Q
    |||||||||||||||||  |||||||||| ||||||||| |||||    
T  55165143 tttccagaatttatttgaataactaagtggaaaaatagtagtcac 55165099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 114 - 291
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccact-ttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatt-ttttagttgcgtgacc 179  Q
    |||||| ||||||||| |||||  |||| ||||||| || ||||||||||||||||||||||||||   ||||||| |||||| ||||||||||||||||    
T  114 tagacatctttaatgtgtacatttttttgtaccactcttgaaaaatttcagttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgacc 213  T
Q  180 attatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    | ||  ||| || || |||||||| ||| |||||| ||||||||||||||  | ||||||||||||||||||||||||    
T  214 actaatttttcaaaaattatttggataagtaagtggaaaaatagtggtcatgcgcattttagttgcgtgaccacattt 291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 404 - 308
Alignment:
Q  85 acacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccaca-ttttttagttgcgtgacca 180  Q
    ||||| ||||| | ||||||  ||| ||||||| | |||| ||||||||||||||||||||| | |||||| ||||| ||||| |||||||||||||    
T  404 acacccttaatttgtacatctctttgtaccactctgaaaattttcagttaaccaaatatatggtctgtgtggccacactttttcagttgcgtgacca 308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 21424 - 21545
Alignment:
Q  82 tagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacat-tttttagttgcgtgacca 180  Q
    ||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| | | ||||| | || || |||| |||||||||||||    
T  21424 tagacacttttaatgtgtacatccatttataccattttaaaaaatttcagttaaccaaatatacggtctgtgtaagcatatattttaagttgcgtgacca 21523  T
Q  181 ttatgtttccagaatttatttg 202  Q
    |||| |||||||||||||||||    
T  21524 ttatttttccagaatttatttg 21545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 21682 - 21579
Alignment:
Q  76 gattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttttt-agttgcg 174  Q
    ||||| |||||||||||||||| ||||  | ||| | |||||||| ||||| |||||||||| |||||||| | |||||||||||||||||| |||||||    
T  21682 gattggtagacacctttaatgtgtaca--cgtttgtgccactttagaaaatctcagttaaccgaatatatggtctgtgtgaccacattttttcagttgcg 21585  T
Q  175 tgacca 180  Q
    ||||||    
T  21584 tgacca 21579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 10617 - 10697
Alignment:
Q  177 accattatgtttccagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    |||||||| |||  |||||||||||||||||||||||| ||||||| |||||||    |||||||||||||||||||||||    
T  10617 accattattttttgagaatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattt 10697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 87112 - 87049
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||||||||||  |||||||||||||||    |||||||||||||||||||||||    
T  87112 atttatttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacattt 87049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 112235 - 112176
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccac 253  Q
    |||||||| |||||||||||| |||||||||||||||   ||||||| ||||||||||||    
T  112235 atttatttagttaactaagtggaaaaatagtggtcacgtgcattttaattgcgtgaccac 112176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 5947 - 5895
Alignment:
Q  194 atttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcg 246  Q
    |||||||||||||| |||||| ||||||||||||||| |  ||||||||||||    
T  5947 atttatttggttaattaagtgcaaaaatagtggtcacgcgtattttagttgcg 5895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 24036 - 24102
Alignment:
Q  190 cagaatttatttggttaactaagtgaaaaaatagtggtcacactcattttagttgcgtgaccacattt 257  Q
    ||||||||||||||| || |||||| ||||||||||||||| | |||||||  ||||| |||||||||    
T  24036 cagaatttatttggtaaaataagtggaaaaatagtggtcacgcgcatttta-atgcgtaaccacattt 24102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 24800 - 24738
Alignment:
Q  119 taaaaaatttcagttaaccaaatatatgatatgtgtgaccacatttt-ttagttgcgtgacca 180  Q
    ||||||| |||||||| ||||||||||| | | |||||||||||||| | |||||||||||||    
T  24800 taaaaaaattcagttagccaaatatatggtctatgtgaccacattttataagttgcgtgacca 24738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 49409 - 49492
Alignment:
Q  72 caatgattgctagacacctttaatgtctacatccttttataccactttaaaaaatttcagttaaccaaatatatgatatgtgtga 156  Q
    ||||||| | |||||||| ||||| |||||| | | ||||| || | | |||||||| ||||||||||||||||| |||||||||    
T  49409 caatgataggtagacacccttaatttctaca-cgtcttatatcattctgaaaaatttaagttaaccaaatatatggtatgtgtga 49492  T

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