View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_high_5 (Length: 529)

Name: NF2097_high_5
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_high_5
NF2097_high_5
[»] chr7 (2 HSPs)
chr7 (60-510)||(45655923-45656367)
chr7 (10-63)||(45656921-45656974)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 60 - 510
Target Start/End: Complemental strand, 45656367 - 45655923
Alignment:
Q  60 ttaatgttataaaacaaatttgtgaatggtgcatgcttatttacttacttgtgtgcacgttagactaaatcttcaaactatgtgggtcacctggtacaca 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45656367 ttaatgttataaaacaaatttgtgaatggtgcatgcttatttacttacttgtgtgcacgttagactaaatcttcaaactatgtgggtcacctggtacaca 45656268  T
Q  160 ggtcatatggcctcatccatgttcattagcactatcttttcttaataaaagtccatgaatgtcactttcctccttctattatgcatatcacagatgnnnn 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  45656267 ggtcatatggcctcatccatgttcattagcactatcttttcttaataaaagtccatgaatgtcactttcctccttctattatgcatatcacagatgtttt 45656168  T
Q  260 nnnnnnnnnnnnnnnccatgtaatctaaatctattgataaaatccattttaactttgaaccgtctctttcaaaatagcagtctaacttctagtatctcaa 359  Q
                   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45656167 gcttttttgctttttccatgtaatctaaatctattgataaaatccattttaactttgaaccatctctttcaaaatagcagtctaacttctagtatctcaa 45656068  T
Q  360 tcattctgaatctttttgtttgaaattcactatctattgaaaacacacnnnnnnnnnnnnnnnnaagtgttccatcttgtttgattggtgaatgaagaaa 459  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||                ||||||| |||||||||||||||||| |||||| ||    
T  45656067 tcattcagaatctttttgtttgaaattcactatctattgaaaacacac------ttttttttttaagtgttacatcttgtttgattggtggatgaagcaa 45655974  T
Q  460 agatgtgtttggtattggtgctctgtattcatccattctttaagggacttt 510  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45655973 agatgtgtttggtattggtgctctgcattcatccattctttaagggacttt 45655923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 45656974 - 45656921
Alignment:
Q  10 aagaatatgactatttcgaaaagttttatttatttattcaaattatactgttaa 63  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  45656974 aagaatatgactatttcgaaaagttttttttatttattcaaattatactcttaa 45656921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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