View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_51 (Length: 250)
Name: NF2097_high_51
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_51 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 39735377 - 39735140
Alignment:
| Q |
13 |
aaggatggaaaaaataacgataaagacaaacaaagcaaacacatagaattaactgttggtgtaaaatgtcatgaacagagtcaacatatagcaaatgaac |
112 |
Q |
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| T |
39735377 |
aaggatggaaaaaataacgataaagacaaacaaagcaaacacgtagaattaactgttggtgtaaaatgtcatgaacagagtcaacatatagcaaatgaac |
39735278 |
T |
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| Q |
113 |
ttacgcttcttgcttcctctgtttgtctcattggccgaataggacgatatgtatggttttgactccttgcccaataccaaaagcgctggaatccagccgg |
212 |
Q |
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| T |
39735277 |
ttacgcttcttgcttcctctgtttgtctcattggccgaataggacgatatgtatggttttgactccttgcccaataccaaaagcgctggaatccagccgg |
39735178 |
T |
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| Q |
213 |
tatgtcaaactctttagcaagcaatttctacatatcac |
250 |
Q |
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| T |
39735177 |
tatgtcaaactctttagcaagcaatttctacatatcac |
39735140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 37466968 - 37467095
Alignment:
| Q |
123 |
tgcttcctctgtttgtctcattggccgaataggacgatatgtatggttttgactccttgcccaataccaaaagcgctggaatccagccggtatgtcaaac |
222 |
Q |
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| T |
37466968 |
tgcttcctcaatttgtgtcaatggacgattaggacgatatgtatggttttgacgctttgcccatagccaaaagcgctggaattgaacaggtatgccgaac |
37467067 |
T |
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| Q |
223 |
tctttagcaagcaatttctacatatcac |
250 |
Q |
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| T |
37467068 |
tctttagcaacctcttcctacatatcac |
37467095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 39912141 - 39912247
Alignment:
| Q |
144 |
tggccgaataggacgatatgtatggttttgactccttgcccaataccaaaagcgctggaatccagccggtatgtcaaactctttagcaagcaatttctac |
243 |
Q |
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| T |
39912141 |
tggccgaaatggacgatatgtatggtttagacgctttgcccatagccaaaagcgctggaatcgagccggtatgccgaactctttggcaacctcttcctac |
39912240 |
T |
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| Q |
244 |
atatcac |
250 |
Q |
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||||||| |
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| T |
39912241 |
atatcac |
39912247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 39848501 - 39848572
Alignment:
| Q |
161 |
atgtatggttttgactccttgcccaataccaaaagcgctggaatccagccggtatgtcaaactctttagcaa |
232 |
Q |
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| T |
39848501 |
atgtatggttttcacgcttttcccataaccaaaagcgctggaattgagctggtatgccaaactctttagcaa |
39848572 |
T |
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