View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_66 (Length: 229)
Name: NF2097_high_66
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_66 |
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Alignment Details
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 13245811 - 13245844
Alignment:
| Q |
191 |
gacttgagataaatccgcataaaactccgtatat |
224 |
Q |
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| T |
13245811 |
gacttgagataaatccgcataaaactccgtatat |
13245844 |
T |
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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 13245641 - 13245680
Alignment:
| Q |
151 |
tgacaatatgatgagttcttatttgaggccagcgtaaaac |
190 |
Q |
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| T |
13245641 |
tgacaatatgatgagttcttattcgaggccaacgtaaaac |
13245680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 6829550 - 6829518
Alignment:
| Q |
78 |
caggttaacctcattaagaactactggtgccac |
110 |
Q |
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| T |
6829550 |
caggttaacctcattaagaactactggtgccac |
6829518 |
T |
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