View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_high_77 (Length: 208)
Name: NF2097_high_77
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_high_77 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 1890890 - 1890717
Alignment:
| Q |
20 |
gttctaacaccgtgattctgacaaacttaccttcttctnnnnnnngtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacat |
119 |
Q |
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| T |
1890890 |
gttctaacaccgtgattctgacaaacttaccttcttctaaaaaaagtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacat |
1890791 |
T |
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| Q |
120 |
gattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatg |
193 |
Q |
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| T |
1890790 |
gattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatg |
1890717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 1884245 - 1884090
Alignment:
| Q |
21 |
ttctaacaccgtgattctgacaaacttaccttcttctnnnnnnngtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatg |
120 |
Q |
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| T |
1884245 |
ttctaacgtcgtgattctgtcaaacttaccttcttctaaaaaaagtgataggaaggagaaaagaagttgcaacagcataagcataggcaacaaagacatg |
1884146 |
T |
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| Q |
121 |
attgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaa |
176 |
Q |
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| T |
1884145 |
attgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaa |
1884090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 1895695 - 1895567
Alignment:
| Q |
65 |
gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagta |
164 |
Q |
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| T |
1895695 |
gtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagta |
1895596 |
T |
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| Q |
165 |
aagccatttcaatagtttcctgtcctatg |
193 |
Q |
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| T |
1895595 |
aagccatttcaatagtttcctgtcctatg |
1895567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 1911131 - 1911038
Alignment:
| Q |
85 |
agtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaata |
178 |
Q |
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| T |
1911131 |
agtaccaacagcataagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaata |
1911038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 1878189 - 1878084
Alignment:
| Q |
65 |
gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagta |
164 |
Q |
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|||||||||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| || |
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| T |
1878189 |
gtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgacta |
1878090 |
T |
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| Q |
165 |
aagcca |
170 |
Q |
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|||||| |
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| T |
1878089 |
aagcca |
1878084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 1902083 - 1902000
Alignment:
| Q |
88 |
accaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
171 |
Q |
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||||| |||||||||||| |||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
1902083 |
accaacagcataagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccat |
1902000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 11537577 - 11537528
Alignment:
| Q |
122 |
ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
171 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| ||| |||| |
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| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccat |
11537528 |
T |
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