View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_1 (Length: 624)
Name: NF2097_low_1
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 173 - 611
Target Start/End: Original strand, 4413323 - 4413762
Alignment:
| Q |
173 |
ttaaggttgtgttttttatgaatggtttaacgattttgttgaaaatcaaaaatgggtttttgaatgtaagatcctagaatcgtaaaattggtagaatcaa |
272 |
Q |
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| T |
4413323 |
ttaaggttgtgttttttatgaatggtttaaagattttgttgaaaatcaaaaatgggtttttgaatgtaagatcgtagaatcgtaaaattggtagaatcaa |
4413422 |
T |
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| Q |
273 |
tgagattttacgttaaaaaa-gggnnnnnnnngaccctgttgcnnnnnnnntgatcctttttaggtttatatagaaaccataaacctaatttgtgtttta |
371 |
Q |
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| T |
4413423 |
tgagattttacgttaaaaaaagggtttttttttaccctgttgcaaataaaatgatcctttttaggtttatatagaaaccgtaaacctaatttgtgtttta |
4413522 |
T |
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| Q |
372 |
gcttcatttcattgagtttctctctcttggtctctttctgcctaaacatgagttcaaagccaacctctactaaccctaaaagctgnnnnnnnagggtttg |
471 |
Q |
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| T |
4413523 |
gcttcatttcattgagtttctctctcttggtctctttctgcctaaacatgagttcaaagccaacctctactaaccctaaaagctgtttttttagggtttg |
4413622 |
T |
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| Q |
472 |
aattgataccctaaacctaatttctggtttagcttcattctgttctctctctctgccctagaaatgagttcaaatgcaaattctgttgattctgctgctg |
571 |
Q |
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| T |
4413623 |
aattgataccctaaacctaatttctggtttagcttcattctgttctctctctctgccctaaaaatgagttcaaatgcaaactctgttgattctgctgctg |
4413722 |
T |
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| Q |
572 |
ctgctagccctagtggtttattttctggaaatgatgatgt |
611 |
Q |
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| T |
4413723 |
ctgctagccctagtggtttattttctggaaaagatgatgt |
4413762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 4413152 - 4413310
Alignment:
| Q |
31 |
tggaaggagtagcatcaatagcattacttccaaacggttcaatttcaggacacttcattcatctttctcattccacctgttatggtcttcatggcactgg |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
4413152 |
tggaaggagtagcatcaatagcattacttccaaacggttcaatttcaggacacttcattcatcttcctcattccacctgttatggacttcatggcactgg |
4413251 |
T |
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| Q |
131 |
taactcactaattcaaccctgtttttcatgtttcgacattgtttaaggttgtgtttttt |
189 |
Q |
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| T |
4413252 |
taactcactaattcaaccctgtttttcatgtttcgacattgtttaaggttgtgtttttt |
4413310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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