View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_10 (Length: 457)
Name: NF2097_low_10
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 41280368 - 41280829
Alignment:
| Q |
11 |
cacagaagtcacaacaacaacaacaaaaaagacatgagagtaacaaaggtgtctcaattattctaatattttagta-------------gtgtgtgtatt |
97 |
Q |
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| T |
41280368 |
cacagaagtcacaacaacaacaacaaaaaagacacgagagtaacaaaggtgtctcaattattttaatattttagtatactagtgtgtgtgtgtgtgtatt |
41280467 |
T |
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| Q |
98 |
tagaggaataatacaaacattaatataatataaacaatttcatagcatggacatatgagcatnnnnnnn--gtgtaattaatgtctctaaacatagcaag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41280468 |
tagaggaataatacaaacattaatataatataaacaatttcatagcatggacatatgagcataaaaaaaaagtgtaattaatgtctctaaacatagcaag |
41280567 |
T |
|
| Q |
196 |
aaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaattacacctaaagcagtactagcagcca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280568 |
aaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaattacacctaaagcagtactagcagcca |
41280667 |
T |
|
| Q |
296 |
aatgaataggatgcataataggatcaatatgagcaccagtagaataagccaacacatacaccaacacaatctgacccaatgaaattctcttagctatcaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280668 |
aatgaataggatgcataataggatcaatatgagcaccattagaataagccaacacatacaccaacacaatctgacccaatgaaattctcttagctatcaa |
41280767 |
T |
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| Q |
396 |
atgtgttgattgagaaggtaaaaccacaacaaatgcagccaatgcctccgcaatagaagcag |
457 |
Q |
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| T |
41280768 |
atgtgttgattgagaaggtaaaaccacaacaaatgcagccaatgccacagcaatagaagcag |
41280829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 38806483 - 38806444
Alignment:
| Q |
264 |
agcaattacacctaaagcagtactagcagccaaatgaata |
303 |
Q |
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| T |
38806483 |
agcaattacacataaagcagtactagctgccaaatgaata |
38806444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 34981782 - 34981887
Alignment:
| Q |
170 |
taattaatgtctctaaacatagcaagaaagaaaatgataaaattacctggtagcaagcaaaacgagggtaaggaagaagcaatgcaagcacacaagcaat |
269 |
Q |
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| T |
34981782 |
taattaatgtctcgaaacatagcatgaaagaaaatgataaaattacctggtagcaagcaaaaggagggcaaggaaga---aatgcaaccacacaagcaat |
34981878 |
T |
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| Q |
270 |
tacacctaa |
278 |
Q |
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||||||||| |
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| T |
34981879 |
tacacctaa |
34981887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 34981660 - 34981612
Alignment:
| Q |
260 |
cacaagcaattacacctaaagcagtactagcagccaaatgaataggatg |
308 |
Q |
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| T |
34981660 |
cacaagcaattacacataaaggagtactagctgccaaatgaataagatg |
34981612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 54185258 - 54185219
Alignment:
| Q |
264 |
agcaattacacctaaagcagtactagcagccaaatgaata |
303 |
Q |
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| T |
54185258 |
agcaattacacataaagcagtactagctgccaaatgaata |
54185219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 46636708 - 46636669
Alignment:
| Q |
264 |
agcaattacacctaaagcagtactagcagccaaatgaata |
303 |
Q |
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| T |
46636708 |
agcaattacacataaagcagtactagctgccaaatgaata |
46636669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 43514794 - 43514833
Alignment:
| Q |
264 |
agcaattacacctaaagcagtactagcagccaaatgaata |
303 |
Q |
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| T |
43514794 |
agcaattacacataaagcagtactagctgccaaatgaata |
43514833 |
T |
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