View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_low_11 (Length: 451)

Name: NF2097_low_11
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_low_11
NF2097_low_11
[»] chr4 (32 HSPs)
chr4 (10-432)||(12124465-12124887)
chr4 (11-429)||(12126522-12126940)
chr4 (14-430)||(2373238-2373653)
chr4 (20-432)||(2367672-2368081)
chr4 (309-426)||(2472032-2472149)
chr4 (69-118)||(5106634-5106683)
chr4 (67-179)||(2391278-2391390)
chr4 (338-426)||(2486276-2486364)
chr4 (315-431)||(2621158-2621274)
chr4 (69-171)||(2518912-2519014)
chr4 (69-179)||(2533992-2534102)
chr4 (69-171)||(2547223-2547325)
chr4 (69-175)||(2621426-2621532)
chr4 (372-417)||(1547467-1547512)
chr4 (315-415)||(2491074-2491174)
chr4 (372-426)||(2460600-2460654)
chr4 (138-179)||(2381650-2381691)
chr4 (72-172)||(2482462-2482562)
chr4 (379-424)||(2547542-2547587)
chr4 (69-118)||(5035301-5035350)
chr4 (72-112)||(2467224-2467264)
chr4 (69-113)||(2477262-2477306)
chr4 (136-179)||(2361222-2361265)
chr4 (53-108)||(2625589-2625644)
chr4 (338-409)||(5035591-5035662)
chr4 (59-93)||(641929-641963)
chr4 (81-111)||(2363162-2363192)
chr4 (372-426)||(2376235-2376289)
chr4 (69-167)||(2490807-2490905)
chr4 (311-409)||(2519175-2519273)
chr4 (69-118)||(2525434-2525483)
chr4 (315-415)||(5106327-5106427)
[»] chr1 (1 HSPs)
chr1 (294-424)||(15837967-15838097)
[»] chr5 (5 HSPs)
chr5 (309-415)||(39252916-39253022)
chr5 (372-424)||(32268773-32268825)
chr5 (69-112)||(28673354-28673397)
chr5 (69-118)||(39253184-39253233)
chr5 (81-113)||(28695603-28695635)
[»] chr8 (6 HSPs)
chr8 (52-113)||(18314718-18314779)
chr8 (371-426)||(39516859-39516914)
chr8 (62-102)||(14004068-14004108)
chr8 (62-102)||(32151893-32151933)
chr8 (372-424)||(32152209-32152261)
chr8 (309-413)||(34935764-34935868)
[»] chr3 (1 HSPs)
chr3 (291-333)||(37579635-37579677)
[»] chr6 (1 HSPs)
chr6 (379-415)||(6437159-6437195)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 12124465 - 12124887
Alignment:
Q  10 catcatcatcatctagtataaaatcgtatttactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagag 109  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12124465 catcatcatcatctggtataaaatcgtattgactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagag 12124564  T
Q  110 atcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcacct 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12124565 atcactctttagcatacaaatcattctggaacaagtgagagaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcacct 12124664  T
Q  210 ttgttggaaatattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttatgttactagctttcgagaggtcgagggatctaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  12124665 ttgttggaaatattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttacgtttctagctttcgagaggtcgagggatctaa 12124764  T
Q  310 ggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgttt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12124765 ggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgttt 12124864  T
Q  410 ggagacaatggagagaggttcca 432  Q
    |||||||||||||||||||||||    
T  12124865 ggagacaatggagagaggttcca 12124887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 12126522 - 12126940
Alignment:
Q  11 atcatcatcatctagtataaaatcgtatttactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagaga 110  Q
    |||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  12126522 atcatcatcatctagtttaaaatcgtatttagtaaaattcatcggataactgaggtcaagttcttctagtaaagggcaacaatctgcaataaagaagaga 12126621  T
Q  111 tcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcacctt 210  Q
    ||||||||| | |||| || ||||| ||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||||| ||| || | ||||||    
T  12126622 tcactcttttgaatactaaacattccggaacaaatgagagaggtcaaatttttcatctgtttggacaaaagtaccatcacatctccatgaatgccacctt 12126721  T
Q  211 tgttggaaatattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttatgttactagctttcgagaggtcgagggatctaag 310  Q
    ||||||||| |||||| |||||||||||||| ||||||| |||| || ||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  12126722 tgttggaaaaattgagagatttgatgcctaaagggaaatcttcagtgcggcaaagaagcaagtttaggtttctagctttcgagaggtcgagggatctaag 12126821  T
Q  311 gttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttg 410  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  12126822 gttggggaaccttttgaataggcggtcaaggaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttg 12126921  T
Q  411 gagacaatggagagaggtt 429  Q
    |||||||||||||||||||    
T  12126922 gagacaatggagagaggtt 12126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 2373653 - 2373238
Alignment:
Q  14 atcatcatctagtataaaatcgtatttactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagatca 113  Q
    ||||| ||||||||||||||| || ||||||  ||||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||    
T  2373653 atcataatctagtataaaatcatacttactacgattcatgggataactcaagtcaagttcttcgagcaaagggaaacaatcagcaatgaagaagagatca 2373554  T
Q  114 ctctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcacctttgt 213  Q
    |||||  | | || | ||||||   ||||||||||| ||||||||| ||||||||||| |||||||| |||||||  | ||  || || |||||| ||||    
T  2373553 ctcttgtgaacactattcattccaaaacaagtgagagaggtcaaatatttcatcttttcggacaaaattaccaacgtacctatatgaatgtcaccattgt 2373454  T
Q  214 tggaaatattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttatgttactagctttcgagaggtcgagggatctaaggtt 313  Q
    |||||| |||||| ||||||| |  | | ||||||| |||  ||||||  ||||||||||| | ||| ||| |||| ||||||||||||||  | |||||    
T  2373453 tggaaaaattgagtgatttgaagtttgaagggaaatcttcggtgtggcagagaagcaagttgaggtttctaccttttgagaggtcgagggaggtgaggtt 2373354  T
Q  314 ggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggag 413  Q
    ||||||||||||||||||||| | ||||||||| ||||||| ||| || ||||| ||||||||| ||||| | ||||||||||||||||||||||||||     
T  2373353 ggggaacctttggaagaggcgattaaggaaaggaattgttttatc-gacattgctatggagaatcggagatgattggtgatggagagaaattgtttggaa 2373255  T
Q  414 acaatggagagaggttc 430  Q
    |||| ||||||||||||    
T  2373254 acaacggagagaggttc 2373238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 2368081 - 2367672
Alignment:
Q  20 atctagtataaaatcgtatttactaatattcatgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagatcactcttt 119  Q
    ||||||| ||||||| |||||||||  || |||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||     
T  2368081 atctagtctaaaatcatatttactacaatacatgggataactgatgtcgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 2367982  T
Q  120 agcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatctttttggacaaaactaccaacacatctgcatcaaggtcacctttgttggaaa 219  Q
     | |||| |||||||| ||||||||| ||| ||||||| ||||||||| |||||||||| | |  ||||  || || || || |   || | ||||||||    
T  2367981 tgaatactaatcattccggaacaagtaagagaggtcaagtttttcatccttttggacaacaattgcaacttatgtgtatgaatg---ccgtggttggaaa 2367885  T
Q  220 tattgagcgatttgatgcctaatgggaaatattcattgtggccaagaagcaagtttatgttactagctttcgagaggtcgagggatctaaggttggggaa 319  Q
     ||||||||||||||||  ||| |||||||  ||| |||||   | || |||||| | ||| ||| |||| |||| |||||||||| | |||||||||||    
T  2367884 cattgagcgatttgatgtttaaagggaaattgtcaatgtggtagacaaacaagttaaggtttctaccttttgagaagtcgagggatgtgaggttggggaa 2367785  T
Q  320 cctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatg 419  Q
    ||||||||| ||||| | ||||||||||||||||| ||| || ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  2367784 cctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggagagaaattgtttggagacgatg 2367685  T
Q  420 gagagaggttcca 432  Q
    || ||||||||||    
T  2367684 gaaagaggttcca 2367672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 426
Target Start/End: Original strand, 2472032 - 2472149
Alignment:
Q  309 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcag-agattgcgatggagaattggagacggttggtgatggagagaaattgt 407  Q
    ||||| |||||||||| ||||||| | | ||||||||||||||||||| ||| |||||| || |||||||  |||||| ||||||||||||| ||| |||    
T  2472032 aggttagggaacctttcgaagaggtgatgaaggaaagggattgtttca-cagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgt 2472130  T
Q  408 ttggagacaatggagagag 426  Q
    |||||||| ||||| ||||    
T  2472131 ttggagaccatggaaagag 2472149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 5106683 - 5106634
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5106683 agttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactctt 5106634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 2391390 - 2391278
Alignment:
Q  67 caagttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcat 166  Q
    |||||||||| ||||||||||| |||||| |||||||||||| |||  ||||    || ||||  | |  ||||||||| ||| ||||||||||||||||    
T  2391390 caagttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaaaattcggaacaagtaagagaggtcaaatttttcat 2391291  T
Q  167 ctttttggacaaa 179  Q
    |||||||||||||    
T  2391290 ctttttggacaaa 2391278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 426
Target Start/End: Original strand, 2486276 - 2486364
Alignment:
Q  338 aaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 426  Q
    |||||||||||||||||  || ||||||| ||  |||||| ||||||||||||||||||| ||||| ||||| ||||| | ||||||||    
T  2486276 aaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagag 2486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 2621274 - 2621158
Alignment:
Q  315 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggaga 414  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||||||  | ||||||||||||||||| | ||| |||||||| |    
T  2621274 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggata 2621175  T
Q  415 caatggagagaggttcc 431  Q
    | | |||||||||||||    
T  2621174 cgagggagagaggttcc 2621158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 2518912 - 2519014
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatct 168  Q
    |||||||  |||||||||||||||||||||||||||||||||||| ||||  | ||| |  |||||    ||||||||||| | |||||||||||||| |    
T  2518912 agttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcatgt 2519011  T
Q  169 ttt 171  Q
    |||    
T  2519012 ttt 2519014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 2533992 - 2534102
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatct 168  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| ||||    ||| |  |||||    ||||||||||| | || |||||||||||||    
T  2533992 agttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatct 2534091  T
Q  169 ttttggacaaa 179  Q
    | |||||||||    
T  2534092 tcttggacaaa 2534102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 2547223 - 2547325
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatct 168  Q
    |||||||| ||||||||||||||||||||||||||||| | |||| ||||    ||| |  | ||| |||||||| ||||| | ||||||||||||||||    
T  2547223 agttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatct 2547322  T
Q  169 ttt 171  Q
    |||    
T  2547323 ttt 2547325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 2621532 - 2621426
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatct 168  Q
    |||||||| |||||||||||||||||||||| |||||| |||||| ||||  | ||   | | |||| | ||||||||||| | |||||||||||||| |    
T  2621532 agttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcatat 2621433  T
Q  169 ttttgga 175  Q
    |||||||    
T  2621432 ttttgga 2621426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 1547512 - 1547467
Alignment:
Q  372 gagaattggagacggttggtgatggagagaaattgtttggagacaa 417  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagacaa 1547467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 2491074 - 2491174
Alignment:
Q  315 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggaga 414  Q
    ||||||||||  ||||| || | |||||||||||||||| |||| ||||||| ||  || ||| |||||||||| |||||||| ||||| ||||| ||||    
T  2491074 gggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgaga 2491173  T
Q  415 c 415  Q
    |    
T  2491174 c 2491174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 2460600 - 2460654
Alignment:
Q  372 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 426  Q
    |||||| ||||||| |||||||||||||| || ||||||||||| ||||||||||    
T  2460600 gagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagag 2460654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 2381691 - 2381650
Alignment:
Q  138 gaacaagtgagaaaggtcaaatttttcatctttttggacaaa 179  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  2381691 gaacaagtaagagaggtcaaatttttcatctttttggacaaa 2381650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 2482462 - 2482562
Alignment:
Q  72 tcttctagtaaagggaaacaatcagcaatgaagaagagatcactcttta-gcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatcttt 170  Q
    ||||||||||||||||| |||||||||||||  ||||  ||| |||||| | | | ||  |||| |||||||||||||| | ||||||||||||||||||    
T  2482462 tcttctagtaaagggaagcaatcagcaatgagaaagatgtca-tctttacggagaaaacccattgtggaacaagtgagagatgtcaaatttttcatcttt 2482560  T
Q  171 tt 172  Q
    ||    
T  2482561 tt 2482562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 2547542 - 2547587
Alignment:
Q  379 ggagacggttggtgatggagagaaattgtttggagacaatggagag 424  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  2547542 ggagacggttggtgatggacagaaactgtttggagacgatggagag 2547587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 5035301 - 5035350
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 118  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||| ||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattctt 5035350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 2467224 - 2467264
Alignment:
Q  72 tcttctagtaaagggaaacaatcagcaatgaagaagagatc 112  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  2467224 tcttcgagtaaagggaaacaatcagcaatgaagaaaagatc 2467264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 2477262 - 2477306
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatca 113  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||    
T  2477262 agttcttctagcaaagggaaacaattagaaatgaagaagagatca 2477306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 2361265 - 2361222
Alignment:
Q  136 tggaacaagtgagaaaggtcaaatttttcatctttttggacaaa 179  Q
    |||||||||||||| | |||||||||||||| ||||||||||||    
T  2361265 tggaacaagtgagagatgtcaaatttttcatttttttggacaaa 2361222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 2625644 - 2625589
Alignment:
Q  53 gggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaaga 108  Q
    ||||||| ||||||  |||||||| |||||||||||||||||| |||| |||||||    
T  2625644 gggataagtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 2625589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 5035591 - 5035662
Alignment:
Q  338 aaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgttt 409  Q
    |||||||||||||||| | |||||||||  ||   ||||| | ||||||||||||||||||||||| |||||    
T  5035591 aaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttggtgatggagagaaactgttt 5035662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 93
Target Start/End: Original strand, 641929 - 641963
Alignment:
Q  59 actgaggtcaagttcttctagtaaagggaaacaat 93  Q
    |||||||||||||||||| ||||||||||||||||    
T  641929 actgaggtcaagttcttcgagtaaagggaaacaat 641963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 2363192 - 2363162
Alignment:
Q  81 aaagggaaacaatcagcaatgaagaagagat 111  Q
    |||||||||||||||||||||||||||||||    
T  2363192 aaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 2376289 - 2376235
Alignment:
Q  372 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 426  Q
    |||||| ||| |||||||||||||||||||||   ||||||||| ||||||||||    
T  2376289 gagaatcggaaacggttggtgatggagagaaaagttttggagacgatggagagag 2376235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 2490807 - 2490905
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagaaaggtcaaatttttcatc 167  Q
    ||||| || ||||||||||||||||||||||| || ||||||||| ||||    ||| |  ||||||   ||||||||||| | |||||||||||||||    
T  2490807 agttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcatc 2490905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 409
Target Start/End: Original strand, 2519175 - 2519273
Alignment:
Q  311 gttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgttt 409  Q
    |||||||||||| |  ||||| || | ||||||||||||||||| ||| ||||||| ||  ||| || | | ||||||||||||||| ||||| |||||    
T  2519175 gttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggtgatggacagaaactgttt 2519273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 2525434 - 2525483
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 118  Q
    |||||||| |||| |||||||||||||||||||||||  |||||| ||||    
T  2525434 agttcttcgagtagagggaaacaatcagcaatgaagagcagatcattctt 2525483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 5106427 - 5106327
Alignment:
Q  315 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtttggaga 414  Q
    |||||||||| ||||||||| | || ||||||||| |||| || || ||||| ||  |||||| |  |||||||||||||||| | ||| ||||| ||||    
T  5106427 gggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttttgaga 5106328  T
Q  415 c 415  Q
    |    
T  5106327 c 5106327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 15838097 - 15837967
Alignment:
Q  294 aggtcgagggatctaaggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtga 393  Q
    |||||||| ||| | ||||| ||||||||||||||||||     || |||||||||||||| |||   ||||  || ||||||| |||||||||||||||    
T  15838097 aggtcgagagatgttaggttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtga 15837998  T
Q  394 tggagagaaattgtttggagacaatggagag 424  Q
    |||||||||| ||||||||||| || |||||    
T  15837997 tggagagaaactgtttggagaccatcgagag 15837967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 415
Target Start/End: Complemental strand, 39253022 - 39252916
Alignment:
Q  309 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtt 408  Q
    ||||||||||||||||  |||||  |   |||| |||||||||||| ||| | |||||||| |||| || ||||||||||| ||||||||||||| |||     
T  39253022 aggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaactgta 39252923  T
Q  409 tggagac 415  Q
    |||||||    
T  39252922 tggagac 39252916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 32268773 - 32268825
Alignment:
Q  372 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagag 424  Q
    |||||| | |||||||||||||||||||| || ||||||||||| ||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Complemental strand, 28673397 - 28673354
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatc 112  Q
    |||||||| || |||||||| |||||||||||||||||||||||    
T  28673397 agttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 39253233 - 39253184
Alignment:
Q  69 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 118  Q
    |||||||| ||||||| ||||||||| ||||||| ||| |||||||||||    
T  39253233 agttcttcaagtaaagagaaacaatccgcaatgatgaatagatcactctt 39253184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 28695635 - 28695603
Alignment:
Q  81 aaagggaaacaatcagcaatgaagaagagatca 113  Q
    |||||||| ||||||||||||||||||||||||    
T  28695635 aaagggaagcaatcagcaatgaagaagagatca 28695603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 18314779 - 18314718
Alignment:
Q  52 tgggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagatca 113  Q
    |||| ||||| ||||| |||||||| || |||||||||||||||||||||| ||||||||||    
T  18314779 tggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 39516859 - 39516914
Alignment:
Q  371 ggagaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 426  Q
    |||||||  ||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  39516859 ggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagag 39516914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 14004068 - 14004108
Alignment:
Q  62 gaggtcaagttcttctagtaaagggaaacaatcagcaatga 102  Q
    |||||| ||||||||||| ||||| ||||||||||||||||    
T  14004068 gaggtcgagttcttctagcaaaggaaaacaatcagcaatga 14004108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 32151893 - 32151933
Alignment:
Q  62 gaggtcaagttcttctagtaaagggaaacaatcagcaatga 102  Q
    ||||||||||||||| || |||||||||||||| |||||||    
T  32151893 gaggtcaagttcttcgagcaaagggaaacaatcggcaatga 32151933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 32152209 - 32152261
Alignment:
Q  372 gagaattggagacggttggtgatggagagaaattgtttggagacaatggagag 424  Q
    |||||| |||||| ||||||||||||||| || ||||||||||| | ||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacgagggagag 32152261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 413
Target Start/End: Complemental strand, 34935868 - 34935764
Alignment:
Q  309 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggagaattggagacggttggtgatggagagaaattgtt 408  Q
    |||||||  |||||||||||||||||   |||| ||||||  |||| |||||| || | ||  ||||||| | |||||||||||| |||||| || ||||    
T  34935868 aggttggtaaacctttggaagaggcgaggaagggaagggagggtttgatcagaaatagtgagagagaatttgtgacggttggtgacggagaggaagtgtt 34935769  T
Q  409 tggag 413  Q
    |||||    
T  34935768 tggag 34935764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 37579677 - 37579635
Alignment:
Q  291 gagaggtcgagggatctaaggttggggaacctttggaagaggc 333  Q
    ||||||||||||||| | ||||| |||||||||||||||||||    
T  37579677 gagaggtcgagggatttgaggtttgggaacctttggaagaggc 37579635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 6437159 - 6437195
Alignment:
Q  379 ggagacggttggtgatggagagaaattgtttggagac 415  Q
    |||||||||||||||||||||| || |||||||||||    
T  6437159 ggagacggttggtgatggagaggaactgtttggagac 6437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University