View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2097_low_15 (Length: 397)
Name: NF2097_low_15
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 66 - 390
Target Start/End: Complemental strand, 50679503 - 50679175
Alignment:
| Q |
66 |
aggaaaaggatctaagttattagatctcatcttctcttaaacaccctcacaagttacaaacattatctgcatgaattctcaaataatatctaactcaata |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50679503 |
aggaaaaggatctaagttattagatctcatcttctcttaaacaccctcacaagtcacaaacattatctgcatgaattctcaaataatatctaactcaata |
50679404 |
T |
|
| Q |
166 |
gtatggtgatgtactgagaagtctccttagaaccatctaaactactacatgcaaacaaataaaaaagcacgagatttttataaatccaaccagccaacat |
265 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50679403 |
gtatggtgatgtactgagaagtctccctagaaccatctaaactactacatgcaaacaattaaaaaagcacgagatttttataaatccaaccagccaacat |
50679304 |
T |
|
| Q |
266 |
aatcgaacgaagaccaaaagtgcatgaatttatttgaaga----cgaatatgaggcaaaaccacacttccaaagaatttgaaatgcaatcatgactacac |
361 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50679303 |
aatcgaacgaagacccaaagtgcatgaatttatttgaagacgatcgaatatgaggcaaaaccacacttccaaagaatttgaaatgcaatcatgactacac |
50679204 |
T |
|
| Q |
362 |
acctagccactaaaacccgtgctcctttg |
390 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
50679203 |
acctagccactaaaacccgtgttcctttg |
50679175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University