View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_17 (Length: 385)
Name: NF2097_low_17
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 9842425 - 9842780
Alignment:
| Q |
18 |
aatgctaatatgatactgtttgaaatcttctgttccattgctctgttatcatcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcatttg |
117 |
Q |
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| T |
9842425 |
aatgctaatatgatactgtttgaaatcttctgttccgttgctttgttatcat---gtgcaaagattgatgaaagattgttgtaattccaagagtcatttt |
9842521 |
T |
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| Q |
118 |
ctgtaattttttataatacttttgaagtcaaatccgattacnnnnnnnn--cttcttcttgcgattagaaaccgactatagtataaaaaagaacagcatg |
215 |
Q |
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| T |
9842522 |
ctgcaattttttacaatacttttgaagtcaaatacgattactttttttcttcttcttcttgcgattagaaaccgactatagtataaaaaagaacagtatg |
9842621 |
T |
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| Q |
216 |
tttttattctttatctttgttaaaaaattttgttcctataaacatttgttgaatagttacatacagtacgtcctttctcttcaaaatgcatacattgttc |
315 |
Q |
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| T |
9842622 |
tttttattctttatctttgttaaaaattcttgttcctataaacatttgttgaatagttacatacagtacgtcctttctcttcaaaatgcatacattgttc |
9842721 |
T |
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| Q |
316 |
taatattggtgaaagttgaacttttatgtatcaagccataactctaatatattattctt |
374 |
Q |
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| T |
9842722 |
taatattggtgaaagttgtacttgtatgtatcaagccataactctaatatattattctt |
9842780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 9853370 - 9853541
Alignment:
| Q |
18 |
aatgctaatatgatactgtttgaaatcttctgttccattgctctgttatcatcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9853370 |
aatgctaatatgatactgtttgaaatcttctgttccattgctttgttatcatcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcatttt |
9853469 |
T |
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| Q |
118 |
ctgtaattttttataatacttttgaagtcaaatccgattacnnnnnnnncttcttcttgcgattagaaaccg |
189 |
Q |
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| T |
9853470 |
ctgtaattttttataatacttttgaagtcaaatccgattacttttttttcttcttcttgcgattagaaaccg |
9853541 |
T |
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