View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2097_low_2 (Length: 572)
Name: NF2097_low_2
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 562
Target Start/End: Complemental strand, 51756476 - 51755925
Alignment:
| Q |
17 |
aagagatacagaaaaaatatacggagaattaattggttgctctatatcaacactttgcgttacaaatttgagtcccaaagagcatgaatgaggagaggat |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
51756476 |
aagagatacagaaaaaatgtacggagaattaattggttgctctatatcaacactttgcgttacaaatttgagagccaaagagcatgaatgaggagatgat |
51756377 |
T |
|
| Q |
117 |
tatatatcaacttatcatgatatatgttatccaaattaattaacccaccaccatatatacattgatgatagcaatattattataacatacttatgtttct |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51756376 |
tatatatcaacttatcatgatatatattatccaaattaattaacccaccaccatatatacattgatgataacaatattattataacatacttatgtttct |
51756277 |
T |
|
| Q |
217 |
ctatctaatctaattagtgattactaccatacaagaacatacaactgaagctgttatttgattcctccatttgcaaaggaagcaaactcgaaatcttcat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51756276 |
ctatctaatctaattagtgattactaccatacaagaacatacagctgaagctgttatttgattcctccatttgcaaaggaagcaaactcgaactcttcat |
51756177 |
T |
|
| Q |
317 |
cccaaaacctaacaacgttgccattaatcaccgttaaatcttggcatgtataccacccaccttcgttctctccagttcttgtcctcaacaagttttccca |
416 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51756176 |
cccaaaacctaacaacgttgccgttaatcaccgttaaatcttggcatgtataccacccaccttcgttctctccagttcttgtcctcaacaagttttccca |
51756077 |
T |
|
| Q |
417 |
actctcccaccaccctaatcttccttctttctcttcccataattcctccgttannnnnnnnaacgtctcaacactttccttgcattctctgtcaatgtca |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51756076 |
actctcccaccaccctaatcttccttctttctcttcccataattcctccgttattttttttaacgtctcaacactctccttgcattctctgtcaatgtca |
51755977 |
T |
|
| Q |
517 |
tcttcatc------gtcataataatacaaggtaaacttcatctttccctttg |
562 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51755976 |
tcttcatcttcatggtcataataatacaaggtaaacttcatctttccctttg |
51755925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University