View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2097_low_22 (Length: 354)
Name: NF2097_low_22
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 46449241 - 46448915
Alignment:
| Q |
9 |
gacatcatcaaacaattcataggtctctggagctggttgaagaagagatatgattgtggttgcatcaagtgcatgtgttgaatgcttgagatatctaata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46449241 |
gacatcatcaaacaattcataggtctctggagctggttgaagaagagatatgattgtggttgcatcaagtgcatgtgttgaatgcttgagatatctaata |
46449142 |
T |
|
| Q |
109 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaattagtaattcgcctgtaaatcagacatcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46449141 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaattagtaattcgcctgtaaatcagacatcaa |
46449042 |
T |
|
| Q |
209 |
ctgattagcatattgcaaatgtatctaaggcgctagtacaaaagacagggttacacactagtacgcttcactaacctgttgtaagccgcttcttttgtcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46449041 |
ctgattagcatattgcaaatgtatctaaggcgctagtacaaaagacagggttacacactagtacgcttcactaacctgttgtaagccgcttcttttgtcc |
46448942 |
T |
|
| Q |
309 |
tcccgagattcccttgagcatttcatc |
335 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
46448941 |
tcccgagattcccttgagcatttcatc |
46448915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 42135760 - 42135815
Alignment:
| Q |
121 |
gttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtcc |
176 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
42135760 |
gttgaactatctaatcctgttgatatttcatccatgaacagtacttttgctggtcc |
42135815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 43460402 - 43460453
Alignment:
| Q |
109 |
atctgatatgtagttgaactatctaaaccagttgatatctcatccatgaaca |
160 |
Q |
| |
|
||||||||||| || |||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
43460402 |
atctgatatgttgtggaactatcaagaccagttgatatttcatccatgaaca |
43460453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 49770278 - 49770216
Alignment:
| Q |
116 |
atgtagttgaactatctaaaccagttgatatctcatccatgaacagcactcttgctggtccaa |
178 |
Q |
| |
|
|||| |||||||| || |||||||| ||||| || |||||||| ||| ||||||||||||||| |
|
|
| T |
49770278 |
atgttgttgaactgtccaaaccagtcgatatttcgtccatgaaaagcgctcttgctggtccaa |
49770216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University