View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_29 (Length: 320)
Name: NF2097_low_29
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 98 - 300
Target Start/End: Original strand, 20023818 - 20024020
Alignment:
| Q |
98 |
aatgttatactcacaatgcatagaaatttatctcatacaattatatccaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa |
197 |
Q |
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| T |
20023818 |
aatgttatactcacaatgcatagaaatttatctcatacaattatattcaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa |
20023917 |
T |
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| Q |
198 |
caaggaatgaatagtgagagtgatatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataagcagtgccctcgaattcgattaatga |
297 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
20023918 |
caaggaatgaatagtgcgagtgatatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataagcagtgcccccgaattcaattaaaga |
20024017 |
T |
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| Q |
298 |
taa |
300 |
Q |
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||| |
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| T |
20024018 |
taa |
20024020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 18764384 - 18764559
Alignment:
| Q |
98 |
aatgttatactcacaatgcatagaaatttatctcatacaattatatccaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18764384 |
aatgttatactcacaatgcatagaaatttatctcatataattatatccaatttcaaatatatcttcaaattttaaaaagtttaggcatgctttaaatgat |
18764483 |
T |
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| Q |
198 |
caaggaatgaatagtgagagtg--atatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataa |
271 |
Q |
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| T |
18764484 |
caaggaatcaatagtgagagtgatatatgttcattgaaatgatcatgaggtcttataattatttggaaaatgataa |
18764559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20023306 - 20023356
Alignment:
| Q |
1 |
tgttctactagaaaatggtcgttgttcgcagaaggaaggggtacactattc |
51 |
Q |
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| T |
20023306 |
tgttctactagaaaatggtcgttgttcgcagaaggaaggagtacactattc |
20023356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 20023268 - 20023305
Alignment:
| Q |
52 |
attgtttgtttatatatatcatgcttcaaatacttatt |
89 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| |
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| T |
20023268 |
attgattgtttatatatatcatgcttcaaatatttatt |
20023305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 21113326 - 21113277
Alignment:
| Q |
210 |
agtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt |
258 |
Q |
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|||||| |||| |||||||||||||||||||| |||||| |||||||||| |
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| T |
21113326 |
agtgagtgtgagatgttcattgaaatgatcatcgaggtcctataattatt |
21113277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 23218738 - 23218689
Alignment:
| Q |
210 |
agtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt |
258 |
Q |
| |
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||||||||||| |||| |||| |||||||||| ||||||||||||||||| |
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| T |
23218738 |
agtgagagtgagatgtccattcaaatgatcatcgaggtcttataattatt |
23218689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 46124647 - 46124595
Alignment:
| Q |
207 |
aatagtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt |
258 |
Q |
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||||||||| |||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
46124647 |
aatagtgagtgtgagatgttcatcaaaatgatcatcgaggtcttataattatt |
46124595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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