View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_31 (Length: 319)
Name: NF2097_low_31
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 32628814 - 32628983
Alignment:
| Q |
17 |
taaatccttgatctatcactggcctaaaataataccaaatggtatacgttacattacaatacatcatcatcatcaaaaataattccaattcagacaaatt |
116 |
Q |
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| T |
32628814 |
taaatccttgatctatcactggcctaaaataataccaaatggtatacgttacattacaatacatcatcatcatcaaaaataattccaattcagacaaatt |
32628913 |
T |
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| Q |
117 |
ttgtacgtgcacgtaagcaatacatacactttattgttattgattcactttgtgtttggttttgcttgtc |
186 |
Q |
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| T |
32628914 |
ttgtacgtgcacgtaagcaatacatacactttattgttattgattcactttctgtttggttttgcttgtc |
32628983 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 32629037 - 32629096
Alignment:
| Q |
241 |
gtgggtatgtttcatgcatttaaataagtgtaggtttgtccacgtggacttagctcagtt |
300 |
Q |
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| T |
32629037 |
gtgggtatgtttcatgcatttaaataagtgtaagtttgtccacgtgagcttagctcagtt |
32629096 |
T |
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