View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_32 (Length: 294)
Name: NF2097_low_32
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 43608922 - 43609175
Alignment:
| Q |
27 |
atcttcttttaacaaaataaaaggcaaagaacacaaacaaagtgacaaataatcgagtaagaaaagggacaaattataattaaaatttacttccaacgaa |
126 |
Q |
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| T |
43608922 |
atcttcttttaacaaaataaaaggcaaagaacacaaacaaagtgacaaataatcgagtaagaaaagggacaaattataattaaaatttacttccaacgaa |
43609021 |
T |
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| Q |
127 |
attattgaggaatgttaccaattgtttgtattaaattattacttttgggc-nnnnnnnnnccgaaagattagatgctatatgaaataattattaaaaaat |
225 |
Q |
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| T |
43609022 |
attattgaggaatgttaccaattgtttgtattaaattattacttttgggcaaaaaaaaaaccgaaagattagatgctatatgaaataattattaaaaaat |
43609121 |
T |
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| Q |
226 |
tagagtgctatgagaatagatacaccactgagatttctaatcaaactgtgattt |
279 |
Q |
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| T |
43609122 |
tagagtgctatgagaatagatacaccactgagatttctaatcaaactgtgattt |
43609175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 70 - 278
Target Start/End: Original strand, 43614259 - 43614464
Alignment:
| Q |
70 |
gacaaataatcgagtaagaaaagggacaaattataattaaaatttacttccaacgaaattattgaggaatgttaccaattgtttgtattaaattattact |
169 |
Q |
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| T |
43614259 |
gacaaataatcaagtaa-aaaagggacaaat---aattaaaatttacttccaacgaaattattgaggaatgttaccaattgtttgtattaaattattgct |
43614354 |
T |
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| Q |
170 |
tttgggcnnnnnnnnn-ccgaaagattagatgctatatgaaataattattaaaaaattagagtgctatgagaatagatacaccactgagatttctaatca |
268 |
Q |
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| T |
43614355 |
tttgggcacaaaaaaaaccgaaagattagatgctatatgaaataattattaaaaaattagagtgctatgagaatagatacaccactgagatttctaatca |
43614454 |
T |
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| Q |
269 |
aactgtgatt |
278 |
Q |
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| T |
43614455 |
aactgtgatt |
43614464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 43602587 - 43602632
Alignment:
| Q |
234 |
tatgagaatagatacaccactgagatttctaatcaaactgtgattt |
279 |
Q |
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| T |
43602587 |
tatgaaaatagatacaccgctgagattactaatcaaactgtgattt |
43602632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 43602473 - 43602513
Alignment:
| Q |
131 |
ttgaggaatgttaccaattgtttgtattaaattattacttt |
171 |
Q |
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| T |
43602473 |
ttgaggaatgttacaagttgtttgtattaaattattacttt |
43602513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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