View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_low_33 (Length: 290)

Name: NF2097_low_33
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_low_33
NF2097_low_33
[»] chr8 (7 HSPs)
chr8 (20-272)||(11645025-11645277)
chr8 (20-146)||(11654443-11654569)
chr8 (165-272)||(11622095-11622202)
chr8 (165-272)||(11640658-11640765)
chr8 (167-272)||(11654713-11654818)
chr8 (21-146)||(11621925-11622046)
chr8 (53-146)||(11640516-11640609)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 11645025 - 11645277
Alignment:
Q  20 tacttcacaccatcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11645025 tacttcacaccatcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaattccaatcaaaccatgatctttcttctaattcttg 11645124  T
Q  120 tatcaactttttgtctaagcattgaagtagcattaggacaactcaataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagc 219  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11645125 tatcaactttttgtctaagcattgaagtagcatcaggacaactcaataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagc 11645224  T
Q  220 atcagaatgtgacaacaaatttcactccgatgacacacttattgtagcattat 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11645225 atcagaatgtgacaacaaatttcactccgatgacacacttattgtagcattat 11645277  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 11654443 - 11654569
Alignment:
Q  20 tacttcacaccatcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttg 119  Q
    |||||||||||||| || |||||| ||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||    
T  11654443 tacttcacaccatcgttaagaaaacaaaataaaaataaaatgaagggtgtcaaaattagtttaaatttcattcaaaccataatctttcttctaattcttg 11654542  T
Q  120 tatcaactttttgtctaagcattgaag 146  Q
    |||||||||| || |||||||||||||    
T  11654543 tatcaactttatgcctaagcattgaag 11654569  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 11622095 - 11622202
Alignment:
Q  165 ataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgt 264  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||  | |||||| ||||    
T  11622095 ataaagcaatcttaacattgaacagctttgaaaaaggtggagatggaggagcaccatcagaatgtgacaacaagtttcactctgacaagacacttgttgt 11622194  T
Q  265 agcattat 272  Q
    ||||||||    
T  11622195 agcattat 11622202  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 11640658 - 11640765
Alignment:
Q  165 ataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgt 264  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||  | |||||| ||||    
T  11640658 ataaagcaatcttaacattgaacagctttgaaaaaggtggagatggaggaggaccatcagaatgtgacaacaagtttcactctgacaagacacttgttgt 11640757  T
Q  265 agcattat 272  Q
    ||||||||    
T  11640758 agcattat 11640765  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 11654713 - 11654818
Alignment:
Q  167 aaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgtag 266  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||  | |||| | ||||||    
T  11654713 aaagcaaccctaacactgaacagctttgaaaaaggtggagatggaggagcaccatcagaatgtgacaacaagtttcactctgacaaaacacctgttgtag 11654812  T
Q  267 cattat 272  Q
    ||||||    
T  11654813 cattat 11654818  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 11621925 - 11622046
Alignment:
Q  21 acttcacaccatcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttgt 120  Q
    |||||||||||||||||| || | |||||   ||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||| |||||    
T  11621925 acttcacaccatcattgaaaata-aaaat---aataaaatgaagggtgtcaaaattagttcaaatttcattcaaaccatggtcattcttctaatccttgt 11622020  T
Q  121 atcaactttttgtctaagcattgaag 146  Q
    ||||||||| ||   |||||||||||    
T  11622021 atcaactttgtgctcaagcattgaag 11622046  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 11640516 - 11640609
Alignment:
Q  53 aataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttgtatcaactttttgtctaagcattgaag 146  Q
    ||||||||||||||||||||| | ||||||| || || |||||| |||||| ||||| |||| |||||||||||||| ||   |||||||||||    
T  11640516 aataaaatgaagggtgtcaaaatgagttcaagttccattcaaacaatgatcattcttgtaatccttgtatcaactttgtgctcaagcattgaag 11640609  T

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