View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2097_low_37 (Length: 281)
Name: NF2097_low_37
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_37 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 30348136 - 30348398
Alignment:
| Q |
20 |
attttgttattagatttgccaagggtttattcttatgatgtttcttgttttagatgaaatgtatttttggtgaatgttagatgaaattgatatgctagtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30348136 |
attttgttattagatttgccaagggtttattcttatgatgtttcttgttttagatgaaatgtatttttggtgaatgttagatgaaattgatatgctagtc |
30348235 |
T |
|
| Q |
120 |
ttgaactaaataactaaataaatagattgcggtcatgttttttactcatgcttttgtaatggttaatctaatattttatttttagactcatgatttg--- |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30348236 |
ttg--------aactaaataaatagattgcggtcatgttttttactcatgcttttgtaatggttaatctaatattttatttttagactcatgatttgttt |
30348327 |
T |
|
| Q |
217 |
------tttatcaaatcttattcaattcaacgatttagggttttaattagcaaaatctctactatttcgac |
281 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30348328 |
atcaaatttatcaaatcttattccattcaacgatttagggttttaattaacaaaatctctactatttcgac |
30348398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 13209843 - 13209951
Alignment:
| Q |
63 |
cttgttttagatgaaatgtatttttggtgaatgttagatgaaattgatatgctagtcttgaactaaataactaaataaatagattgcggtcatgtttttt |
162 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| |||| ||| |||| |||| ||||||||| |||||||||||||||||| ||||||| | ||| |
|
|
| T |
13209843 |
cttgttttagatgaagtgtatatttggtgaatgttaggtgaagttgttatgttagtattgaactaagtaactaaataaatagattatggtcatg-tcttt |
13209941 |
T |
|
| Q |
163 |
actcatgctt |
172 |
Q |
| |
|
|||||||||| |
|
|
| T |
13209942 |
actcatgctt |
13209951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University