View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2097_low_4 (Length: 563)
Name: NF2097_low_4
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 191 - 548
Target Start/End: Complemental strand, 27561830 - 27561473
Alignment:
| Q |
191 |
gtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcgtttcttacaatattaaa |
290 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
27561830 |
gtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtacgtttggatctcctcatttcttacaatattaaa |
27561731 |
T |
|
| Q |
291 |
cgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaa |
390 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27561730 |
cgttttagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatcgaaa |
27561631 |
T |
|
| Q |
391 |
gatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgaatgggaaggttattcacacaaactgccctttcattttcttt |
490 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
27561630 |
gatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgagtgggaaggttattcacacaaacttccctttcattttcttt |
27561531 |
T |
|
| Q |
491 |
ctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
548 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27561530 |
ctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
27561473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 32 - 544
Target Start/End: Complemental strand, 36668870 - 36668348
Alignment:
| Q |
32 |
tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc |
131 |
Q |
| |
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|||||||| |||||| |||| ||||| |||||||||||||| |||| ||||| |||| ||| |||||||||| |||||||||||||| ||||||||| |
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| T |
36668870 |
tttaggctagcaggactaacattgcaaaacgggagaaggaattgaattctaaattggagtctgcggttaatgcaaggcatatccatgacatttctgactc |
36668771 |
T |
|
| Q |
132 |
tatgactgatgagctcaagattcagttgcaaaagtgtattaa--------atgatgttgaaatcaaggtggaagaggccaaagaggatactggtctgtat |
223 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||| | |
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| T |
36668770 |
taggactgatgagctcaagattcagttgcaaaagtgtattaatgaaaggaatgatcttgaaatcaagatggaagaggccaaacaagatattggtctgtgt |
36668671 |
T |
|
| Q |
224 |
atcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcgtttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtt |
323 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
36668670 |
atcatattttcattatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcagggagaaaagatatcaaagctgagtt |
36668571 |
T |
|
| Q |
324 |
tcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgag |
423 |
Q |
| |
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| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| | |
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| T |
36668570 |
tggtgtgatgtcttcagccttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcatgaagctgtatcattgcgtgcg |
36668471 |
T |
|
| Q |
424 |
aaagcacattcatt--cagcgaaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtcttgtacaga |
521 |
Q |
| |
|
||||||||||| | || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
36668470 |
aaagcacattcgctaagagagaaattgagtgggaaggttattcacacaaactgccatttcattttctttctcaccttctttgtgataggtcttttacaga |
36668371 |
T |
|
| Q |
522 |
aatttatctaaataatttgagtc |
544 |
Q |
| |
|
|| ||||||| |||||||||||| |
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|
| T |
36668370 |
aagttatctagataatttgagtc |
36668348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 173 - 429
Target Start/End: Original strand, 36672630 - 36672887
Alignment:
| Q |
173 |
aatgatgttgaaatcaaggtggaagaggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctc |
272 |
Q |
| |
|
|||||| | ||||| ||| ||||| |||||||| | |||| ||||||| ||||||| |||| ||||||||||| || ||||| |||||||| ||||||| |
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|
| T |
36672630 |
aatgatatggaaattaagatggaaaaggccaaacaagatattggtctgcatatcacattttatctatttagatatgaagtgtctatgtttgaatctccta |
36672729 |
T |
|
| Q |
273 |
gtttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatct-aaagaaatggggatgatggaaa |
370 |
Q |
| |
|
|||||||||| |||| | |||| | |||||| | |||||||| |||||| |||||||| ||| | |||||||||| ||| |||| ||||||| ||| |
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| T |
36672730 |
gtttcttacagtattgcatgtttaaaggagaataggtatcaaagttgagttacgtgtgatgatcat-agctttatctaaaaaaaattgggatgacagaag |
36672828 |
T |
|
| Q |
371 |
cacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagca |
429 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||| |||| ||||| ||||||||||| |
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|
| T |
36672829 |
atcagttgaagtgatggaaagatgtagctcttgaagttgtatcattgtgtgagaaagca |
36672887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 31707919 - 31707837
Alignment:
| Q |
223 |
tatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcgtttcttacaatattaaacgtttcagggagaaa |
305 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |
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| T |
31707919 |
tatcacattttctctatttagatttgtagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcaaggagaaa |
31707837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 199 - 411
Target Start/End: Original strand, 27563307 - 27563519
Alignment:
| Q |
199 |
ggccaaagaggatactggtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcgtttcttacaatattaaacgtttcag |
298 |
Q |
| |
|
||||||| | ||| || ||||| ||||||| |||| | ||||||||| | |||||||||||||| |||| || ||||||||| ||||| | ||||||| |
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| T |
27563307 |
ggccaaacaagatgctagtctgcatatcacattttttgtatttagatgtctagtgtgtatgtttgaatcttctagtttcttaccatattgcatgtttcag |
27563406 |
T |
|
| Q |
299 |
ggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatctaaagaaat-ggggatgatggaaacacagttgaagcgatggaaagatgca |
396 |
Q |
| |
|
||||| | |||||| || |||||| ||||||| ||||| ||||||||||||| |||| ||||||||||||| ||||||||| ||| ||| |||||| |
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|
| T |
27563407 |
ggagagaagatatc-aacttgagttatgtgtgatgatctt-agctttatctaaaaaaatcggggatgatggaagagcagttgaagtgatagaaggatgca |
27563504 |
T |
|
| Q |
397 |
gctcttaaagctgta |
411 |
Q |
| |
|
|||||| ||| |||| |
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| T |
27563505 |
gctcttgaagttgta |
27563519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 27563153 - 27563291
Alignment:
| Q |
32 |
tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc |
131 |
Q |
| |
|
|||||||||||||| |||| | |||| ||||||||||| | ||||||||||| |||| ||||| |||||||| || ||||| |||||||||||| | |
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| T |
27563153 |
tttaggctggcagggctaacatctcaaaatgggagaaggaactgaatttgaaattggagtctgctgataatgcaaggcgtatccttgacaattctga--c |
27563250 |
T |
|
| Q |
132 |
tatgactgatgagctcaagattcagttgcaaaagtgtatta |
172 |
Q |
| |
|
|||||| |||| ||| || |||||||||| || ||||||| |
|
|
| T |
27563251 |
tatgaccgatggcctcgagcttcagttgcagaaatgtatta |
27563291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 24 - 548
Target Start/End: Complemental strand, 29411410 - 29410876
Alignment:
| Q |
24 |
aatgcaactttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaat |
123 |
Q |
| |
|
||||||| |||||||||||||| ||||| | |||| ||||||||||| || || |||||||| |||| |||||||||||||| |||||||||||||||| |
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| T |
29411410 |
aatgcaattttaggctggcagggttaacgtctcaaaacgggagaaggagttgaagttgaaattggagtctgctgttaatgcaaggcatatccatgacaat |
29411311 |
T |
|
| Q |
124 |
tctgactctatgactgatgagctcaagattcagttgcaaaagtgtatta--------aatgatgttgaaatcaaggtggaagaggccaaagaggatactg |
215 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| ||||| |||||||||| |||||| ||||||| | | |||||||||||||| ||||||||| |
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|
| T |
29411310 |
tctgactctaggattgatgagctcaagcttcaattgcagaagtgtattattgaaaagaatgatcttgaaattacgatggaagaggccaaacaggatactg |
29411211 |
T |
|
| Q |
216 |
gtctgtatatcaccttttctctatttagatttgcagtgtgtatgtttggatctcctcgtttcttacaatattaaacgtttcagggagaaatgatatcaaa |
315 |
Q |
| |
|
||||| || ||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| | ||||| ||||||||||||| || |||||| |
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|
| T |
29411210 |
gtctgcgtagcacattttctctatttatatttgcactgtgtatgtttggatcccctcgtttcttacactgttaaatttttcagggagaaaagacatcaaa |
29411111 |
T |
|
| Q |
316 |
gctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcat |
415 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
29411110 |
gccgagtttcgtgtgatggcttcagctttatctaaagaaatggggatgatggacgcgcaggtgaagcgatggaaagatgcagctcttgaagctgtatcat |
29411011 |
T |
|
| Q |
416 |
tgcgtgagaaagcacattcattcagcg--aaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtct |
513 |
Q |
| |
|
| ||||||||||| |||||| | || | ||||||| ||| |||||||||| || ||| | ||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
29411010 |
tacgtgagaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaagtaccctttcattttctttctcgcctactttgtgataagtct |
29410911 |
T |
|
| Q |
514 |
tgtacagaaatttatctaaataatttgagtctgtg |
548 |
Q |
| |
|
| |||||||||| |||| ||||||||||| |||| |
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|
| T |
29410910 |
tttacagaaattcatcttgataatttgagtttgtg |
29410876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 231 - 547
Target Start/End: Original strand, 24202401 - 24202719
Alignment:
| Q |
231 |
tttctctatttagatttgcagtgtgtatgtttggatctcctcgtttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtg |
330 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||| |||||||||| ||| |||||||||| |||||||||||| |
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|
| T |
24202401 |
tttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggacaaaagatatcaaagttgagtttcgtgtt |
24202500 |
T |
|
| Q |
331 |
atatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcac |
430 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||| |||| ||| | |||||||||||||||| |
|
|
| T |
24202501 |
atggcttcaactttatctaaagaaatgggaatgatggatgcacagttgaagcgatgagaagatgcagcacttgaagccgtatccttgcgtgagaaagcac |
24202600 |
T |
|
| Q |
431 |
attcatt--cagcgaaattgaatgggaaggttattcacacaaactgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttat |
528 |
Q |
| |
|
||||| | ||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| |
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|
| T |
24202601 |
attcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttgtcaccgactttgtgataggtcttttacagcaatttat |
24202700 |
T |
|
| Q |
529 |
ctaaataatttgagtctgt |
547 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
24202701 |
ctagataatttgagtctgt |
24202719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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