View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_56 (Length: 249)
Name: NF2097_low_56
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 12255055 - 12254836
Alignment:
| Q |
19 |
cttggtagtttcatgacaacaaattcnnnnnnnctaaagtaaataaatgatttgtatacaaatattaattaaacaattaattcatagttatctcttcctt |
118 |
Q |
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| T |
12255055 |
cttggtagtttcatgacaacaaattctttttttctaaagtaaataaatgaattgtatacaaatattaattaaacaattaattcatagttatttcttcctt |
12254956 |
T |
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| Q |
119 |
tctttacattttcttatcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccataccctaaaacta |
218 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12254955 |
tctttacattttcgtatcaaattccattacttaaaccctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccataccctaaaacta |
12254856 |
T |
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| Q |
219 |
cttatatgtttcagaataat |
238 |
Q |
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||||||||||||| |||||| |
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| T |
12254855 |
cttatatgtttcataataat |
12254836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 12260598 - 12260379
Alignment:
| Q |
19 |
cttggtagtttcatgacaacaaattcnnnnnnnctaaagtaaataaatgatttgtatacaaatattaattaaacaattaattcatagttatctcttcctt |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12260598 |
cttggtagtttcatgacaacaaattctttttttctaaagtaaataaatgaattgtatacaaatattaattaaacaattaattcatagttatttcttcctt |
12260499 |
T |
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| Q |
119 |
tctttacattttcttatcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccataccctaaaacta |
218 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12260498 |
tctttacattttcgtatcaaattccattacttaaaccctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccataccctaaaacta |
12260399 |
T |
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| Q |
219 |
cttatatgtttcagaataat |
238 |
Q |
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||||||||||||| |||||| |
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| T |
12260398 |
cttatatgtttcataataat |
12260379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 12285270 - 12285203
Alignment:
| Q |
126 |
attttcttatcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaa |
193 |
Q |
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||||||| ||||||| |||||||||| || |||||||| ||||||||||||||| ||||||||||||| |
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| T |
12285270 |
attttctcatcaaatcccattacttataccctcttccaacattttcatctcaaataatcattcctaaa |
12285203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 12258502 - 12258430
Alignment:
| Q |
134 |
atcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccat |
206 |
Q |
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| T |
12258502 |
atcaaatcccattgctcaaaccctcttccaacgttttcatctcaaacaatcatttctaaaaatataaaaccat |
12258430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 12265894 - 12265822
Alignment:
| Q |
134 |
atcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccat |
206 |
Q |
| |
|
||||||| ||||| || |||| |||||||| | ||||||||||||||||||||| ||||||||| |||||||| |
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| T |
12265894 |
atcaaatcccattgctcaaaccctcttccaacgttttcatctcaaacaatcatttctaaaaatataaaaccat |
12265822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 12265940 - 12266012
Alignment:
| Q |
134 |
atcaaattccattacttaaactctcttccagcattttcatctcaaacaatcattcctaaaaatacaaaaccat |
206 |
Q |
| |
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||||||| ||||| || |||| |||||||| | ||||||||||||||||||||| ||||||||| |||||||| |
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| T |
12265940 |
atcaaatcccattgctcaaaccctcttccaacgttttcatctcaaacaatcatttctaaaaatataaaaccat |
12266012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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