View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_59 (Length: 247)
Name: NF2097_low_59
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_59 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 30551533 - 30551753
Alignment:
| Q |
29 |
gtgatcataaggtaacaaatataaccaactatcaactaatcatcaccaccttataactg----ccttaaacaatattgaactaattttaacaaatttcaa |
124 |
Q |
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| T |
30551533 |
gtgatcataaggtaacaaatataactgactatcaactaatcatcaccaccttataactaactaccttaaacaatattcaaataattttaacaaatctcaa |
30551632 |
T |
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| Q |
125 |
actatatctataacaattttacctgagtgacaagtgtataaaggggtagagtgacataagcacaaagaagctgaacagctaaacccaatgcaatccttat |
224 |
Q |
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| T |
30551633 |
actatatctataaca--tttacctgagtgacaagtgtataaaggggtagagtgacataagcacaaagaagctgaacagctaaacccaatgcaatccttat |
30551730 |
T |
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| Q |
225 |
ggcaatgtcctctttttctctat |
247 |
Q |
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||||||||||||||||||||||| |
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| T |
30551731 |
ggcaatgtcctctttttctctat |
30551753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 37214271 - 37214219
Alignment:
| Q |
82 |
taactgccttaaacaatattgaactaattttaacaaatttcaaactatatcta |
134 |
Q |
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| T |
37214271 |
taactaccttaaacaatatccaactaattctaacaaatatcaaactatctcta |
37214219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 33221708 - 33221799
Alignment:
| Q |
40 |
gtaacaaatataaccaactatcaactaatcatcaccaccttataactgccttaaacaatattgaactaattttaacaaatttcaaactatat |
131 |
Q |
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| T |
33221708 |
gtaacaaatataactaactatcgactaatcataactaatttgtaactactttaaacgatattcaactaagtataacaaatttctaactatat |
33221799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 4573130 - 4573199
Alignment:
| Q |
65 |
taatcatcaccaccttataactgccttaaacaatattgaactaattttaacaaatttcaaactatatcta |
134 |
Q |
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| T |
4573130 |
taatcataactaacttataactatcttaaacaatactaaactaatttcaacaaatatgaaactatatcta |
4573199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 4559208 - 4559292
Alignment:
| Q |
50 |
taaccaactatcaactaatcatcaccaccttataactgccttaaacaatattgaactaattttaacaaatttcaaactatatcta |
134 |
Q |
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| T |
4559208 |
taaccaacttgcatctaatcataactaacttataactatcttgaaaaatatcaaactaattttaacaaatctgaaactatatcta |
4559292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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