View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_low_64 (Length: 239)

Name: NF2097_low_64
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_low_64
NF2097_low_64
[»] chr2 (19 HSPs)
chr2 (1-222)||(9321241-9321462)
chr2 (8-211)||(9283841-9284044)
chr2 (8-222)||(8573150-8573364)
chr2 (8-222)||(9060786-9061000)
chr2 (5-213)||(9274789-9274994)
chr2 (5-222)||(9328861-9329081)
chr2 (8-213)||(9316302-9316507)
chr2 (8-138)||(7115290-7115420)
chr2 (8-213)||(9292205-9292407)
chr2 (1-196)||(10353412-10353607)
chr2 (8-64)||(9357606-9357662)
chr2 (8-213)||(10336115-10336323)
chr2 (172-222)||(9065407-9065457)
chr2 (156-222)||(16269351-16269417)
chr2 (1-138)||(10372219-10372356)
chr2 (174-222)||(10348056-10348104)
chr2 (85-209)||(12012274-12012398)
chr2 (172-207)||(12005933-12005968)
chr2 (32-138)||(10348140-10348246)
[»] scaffold0667 (1 HSPs)
scaffold0667 (8-222)||(4748-4962)
[»] chr8 (1 HSPs)
chr8 (8-222)||(41966374-41966588)
[»] chr3 (1 HSPs)
chr3 (8-157)||(37462828-37462977)
[»] chr4 (1 HSPs)
chr4 (8-196)||(26575164-26575352)
[»] chr1 (5 HSPs)
chr1 (84-222)||(29467516-29467654)
chr1 (11-213)||(29452967-29453169)
chr1 (89-222)||(29423533-29423666)
chr1 (8-57)||(29442978-29443027)
chr1 (173-213)||(29443146-29443186)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9321462 - 9321241
Alignment:
Q  1 tcatggtttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcaga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321462 tcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcaga 9321363  T
Q  101 ctcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttc 200  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321362 ctcttcagctctataacaaactcgtggaaaataattcccagtatgccgtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttc 9321263  T
Q  201 actggataatgacaaagaaact 222  Q
    ||||||||||||||||||||||    
T  9321262 actggataatgacaaagaaact 9321241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 9283841 - 9284044
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||  |||| ||| |||||||||||| ||||||||| |||||||||||    
T  9283841 ttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttggctagtatctctacaaaactctttttatcattcacatgccagactcttca 9283940  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggat 207  Q
    | || |||||||||||||||||||||||||| | | |||  ||| || ||  ||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  9283941 gctccaaaacaaactcgtggaaaataattcctattatgccctacactgtttactatgctcaagccatgggggtttttgttgagaattctattcactggat 9284040  T
Q  208 aatg 211  Q
    ||||    
T  9284041 aatg 9284044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 8573150 - 8573364
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    |||||||||||||  ||||||  |||||||||||||||| ||||||||||||||| | ||| ||| ||| ||||||||||||||||||||| |||||| |    
T  8573150 ttcggttttgatctattaaccgccgattacaaactcctccgaatctcttggttagtcactcaacataaccctttttatgattcacatgtcacactcttta 8573249  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggat 207  Q
    | |  ||||||||||||||||||| ||||||||||  ||  ||| |||||   |||| ||||  |||||||||||||||| ||||||||||||||||| |    
T  8573250 gcttgaaaacaaactcgtggaaaacaattcccagtacgccatacgctcttcaatatgttcaagccatgggggtttttgttcagaattctcttcactgggt 8573349  T
Q  208 aatgacaaagaaact 222  Q
     ||| | ||||||||    
T  8573350 tatggccaagaaact 8573364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 9060786 - 9061000
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    |||||||||||||| || |||  |||||||||||||||||||||| ||||||||    ||| ||| |||  ||||||||||||||||||||| ||||| |    
T  9060786 ttcggttttgatccattcaccgccgattacaaactcctcagaatcacttggttatttgctcgacaaaacattttttatgattcacatgtcagtctcttta 9060885  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggat 207  Q
    | |  ||||||||||||||||||| |||||||||| ||| |||| |||||   |||| ||||  |||||||||||||||| ||||||||||||||||| |    
T  9060886 gcttgaaaacaaactcgtggaaaacaattcccagtatgccgtacgctcttcaatatgttcaagccatgggggtttttgttcagaattctcttcactgggt 9060985  T
Q  208 aatgacaaagaaact 222  Q
     ||| | ||||||||    
T  9060986 tatggccaagaaact 9061000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 9274994 - 9274789
Alignment:
Q  5 ggtttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactct 104  Q
    ||||| ||||||||||||||| || ||||||| ||||| ||||||||||| ||||||||   |  |||  ||||||||   || |||||||| |||||||    
T  9274994 ggttttggttttgatcctttatccggcgattataaacttctcagaatctcatggttagctgatatacattactctttt---gaatcacatgtgagactct 9274898  T
Q  105 tcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactg 204  Q
    |||| |  |||||||||||||||||||||||||||||| ||| |||| ||||||  |||| ||||  ||||||| |||||||||||||||||||||||||    
T  9274897 tcagcttgaaaacaaactcgtggaaaataattcccagtatgccgtacgctcttaaatatgttcaagccatggggatttttgttgagaattctcttcactg 9274798  T
Q  205 gataatgac 213  Q
    | |||||||    
T  9274797 ggtaatgac 9274789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 9329081 - 9328861
Alignment:
Q  5 ggtttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaac---tctttttatgattcacatgtcagac 101  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||| ||||| |||||  |||| |  |    || | || || | ||||||||||||    
T  9329081 ggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagac 9328982  T
Q  102 tcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttca 201  Q
    ||||||  |||||||||||||| ||||||||||||||   | |||  ||| ||||| |||||||||||  || ||||||||| |||||||||||||||||    
T  9328981 tcttcaactctaaaacaaactcttggaaaataattcctgctatgccctacgctcttgtctatgctcaaaacacgggggttttggttgagaattctcttca 9328882  T
Q  202 ctggataatgacaaagaaact 222  Q
    |||||||||||| ||||||||    
T  9328881 ctggataatgactaagaaact 9328861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 9316507 - 9316302
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    |||||||||||||| | |||  | |||||||||||||||||||| |||||| | |||  |   ||   |||||||||||||||||||||||| ||||| |    
T  9316507 ttcggttttgatccatcaacaggtgattacaaactcctcagaatttcttggatggccgatggtcattgctctttttatgattcacatgtcagtctcttta 9316408  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggat 207  Q
    | |  ||||||||||||||||||| |||||||||| ||| |||| |||||   |||| ||||  |||||||||||||||| ||||||||||||||||| |    
T  9316407 gcttgaaaacaaactcgtggaaaacaattcccagtatgccgtacgctcttcaatatgttcaagccatgggggtttttgttcagaattctcttcactgggt 9316308  T
Q  208 aatgac 213  Q
    ||||||    
T  9316307 aatgac 9316302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 7115290 - 7115420
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    ||||||||||||||||||||    ||||||||||| ||||||||||||||||||  |  |||||  ||||||||||||||||||||  ||||||||||||    
T  7115290 ttcggttttgatcctttaacagatgattacaaacttctcagaatctcttggttatgcaatccaccaaactctttttatgattcacagatcagactcttca 7115389  T
Q  108 gttctaaaacaaactcgtggaaaataattcc 138  Q
    |||  |||||||||||||||||||| |||||    
T  7115390 gtttgaaaacaaactcgtggaaaatgattcc 7115420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 9292407 - 9292205
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    ||||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||   | |||  ||||||||   ||| |||| || ||||||||||    
T  9292407 ttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacattactctttt---gatccacaggtgagactcttca 9292311  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggat 207  Q
    | || ||||| |||||||||||||| ||||| ||| ||| |||| |||||   |||| ||||   ||||||||||||||| |||||||| | |||||| |    
T  9292310 gctccaaaactaactcgtggaaaatcattcctagtatgccgtacgctcttcaatatgttcaagctatgggggtttttgttcagaattctatccactgggt 9292211  T
Q  208 aatgac 213  Q
    ||||||    
T  9292210 aatgac 9292205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10353607 - 10353412
Alignment:
Q  1 tcatggtttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcaga 100  Q
    |||||| |||||||||||| || || || ||||||||||||||||||||||||||   ||   |  || ||| ||| ||||||||||| |||||||||||    
T  10353607 tcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaacttgctcgatctacaaaaccctttttatgatccacatgtcaga 10353508  T
Q  101 ctcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattct 196  Q
    |||||||| |  ||||||||||| |||||| ||||||| | |||||  || ||||||  |||||||  |   ||||||||||||||||||||||||    
T  10353507 ctcttcagcttgaaaacaaactcatggaaagtaattcctaatttgccttattctctttactatgctttaacaatgggggtttttgttgagaattct 10353412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 9357662 - 9357606
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcc 64  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  9357662 ttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggatagcc 9357606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 10336323 - 10336115
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcc--tctcca-cacaactctttttatgattcacatgtcagactct 104  Q
    |||||||||||| | ||| ||  |||||||||||||||||||||||||||||| | |  ||| || ||| |  ||||| || |||||||| | | |||||    
T  10336323 ttcggttttgattcattatccgccgattacaaactcctcagaatctcttggttcgtcgatctacaacaccatacttttgataattcacatttgacactct 10336224  T
Q  105 tcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactg 204  Q
    |||| || ||||||||||| ||||||| | ||||   | ||| |||   ||||  |||| ||| |  |||||| ||||||||||||||||||||||||||    
T  10336223 tcagctcgaaaacaaactcttggaaaacacttccggatatgccgtatattctttactatactctaaccatgggtgtttttgttgagaattctcttcactg 10336124  T
Q  205 gataatgac 213  Q
    |||||||||    
T  10336123 gataatgac 10336115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 9065407 - 9065457
Alignment:
Q  172 catgggggtttttgttgagaattctcttcactggataatgacaaagaaact 222  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  9065407 catgggggtttttgttgagaattctattcacttgataatgacgaagaaact 9065457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 16269417 - 16269351
Alignment:
Q  156 ttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 222  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||| ||| |||||| | ||||||||    
T  16269417 ttatttatgctcaaatcatgggggtttttgttgagaattctattcgctgtataatggcgaagaaact 16269351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10372356 - 10372219
Alignment:
Q  1 tcatggtttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcaga 100  Q
    |||||| |||||||||||| ||||| || ||||| |||||||||||||||||||||  |||  |   |  || | | ||||||||||| |||||||  ||    
T  10372356 tcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatctcttacttaatcgaccaccaaagcactttttatgatccacatgttcga 10372257  T
Q  101 ctcttcagttctaaaacaaactcgtggaaaataattcc 138  Q
    |||||||| || ||| | ||||||||||| ||||||||    
T  10372256 ctcttcagctccaaagctaactcgtggaagataattcc 10372219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 10348104 - 10348056
Alignment:
Q  174 tgggggtttttgttgagaattctcttcactggataatgacaaagaaact 222  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  10348104 tgggggtttttgttgagaattctattcactggattatgacgaagaaact 10348056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 12012274 - 12012398
Alignment:
Q  85 tgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggttttt 184  Q
    ||||||| |||||||||||||||  || |||||||||||||||||| || |||| ||| |    ||   ||||  |||||||| |  |||||| ||||||    
T  12012274 tgattcatatgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggagttttt 12012373  T
Q  185 gttgagaattctcttcactggataa 209  Q
    ||||||||||||||||| |||||||    
T  12012374 gttgagaattctcttcattggataa 12012398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 12005933 - 12005968
Alignment:
Q  172 catgggggtttttgttgagaattctcttcactggat 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  12005933 catgggggtttttgttgagaattctcttcactggat 12005968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 10348246 - 10348140
Alignment:
Q  32 gattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaa 131  Q
    |||||||||||||||||||| |||   |||  |  || ||| ||| ||||||||||| |||| || ||||||||||| |  ||||||||||| ||||| |    
T  10348246 gattacaaactcctcagaatttctcacttactcgatctacagaaccctttttatgatccacaagtgagactcttcagcttgaaaacaaactcatggaaga 10348147  T
Q  132 taattcc 138  Q
    |||||||    
T  10348146 taattcc 10348140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 4962 - 4748
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||| ||| ||||||||||| ||||||| |||||||| |    
T  4962 ttcggttttgatcctttaaccggcgattacaaaatcctcagactctcttggttagtctctctacaaaaccctttttatgatccacatgttagactcttta 4863  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggat 207  Q
    | |  ||||| |||||||||||||||||||| | | ||| |||| | ||| ||| |||||||  |||||||||||| |||||| ||||| ||||||||||    
T  4862 gcttgaaaaccaactcgtggaaaataattcctactatgccgtacgcccttgtctttgctcaaaccatgggggttttggttgaggattctattcactggat 4763  T
Q  208 aatgacaaagaaact 222  Q
    |||| ||||||||||    
T  4762 aatggcaaagaaact 4748  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 41966374 - 41966588
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||       || |||   ||||  || ||||||||||||||| || || |    
T  41966374 ttcggttttgatccattaaccagcgatcacaaactcctcagaatctcttggtcttttgatcaacaactctctacttttgattcacatgtcaggctattta 41966473  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggat 207  Q
    | |||||||  |||||||||||||||||||||||  ||| |||  |||||  ||||||||||  |||||||||||||||| | |||||||||||||||||    
T  41966474 gctctaaaaacaactcgtggaaaataattcccagaatgccgtatgctctttactatgctcaaaccatgggggtttttgttcacaattctcttcactggat 41966573  T
Q  208 aatgacaaagaaact 222  Q
    |||||| ||| ||||    
T  41966574 aatgaccaaggaact 41966588  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 37462977 - 37462828
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||| |   |  || ||| ||| ||||||||||| ||||||| ||||||||||    
T  37462977 ttcggttttgattctttaaccggcgattacaaactcctcagaatctcttggcttctcgatctacaaaaccctttttatgatccacatgtgagactcttca 37462878  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctctt 157  Q
    | || ||||||||||||||||||||| |||| ||||| |  |||||||||    
T  37462877 gctccaaaacaaactcgtggaaaatagttcctagttttccctactctctt 37462828  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 26575352 - 26575164
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttca 107  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||  ||   |  || ||| ||| ||||||||||| ||||||| ||||||||||    
T  26575352 ttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccacatgttagactcttca 26575253  T
Q  108 gttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattct 196  Q
    | |  ||||||||||| |||||||||||||| | ||| |  ||| |||||  |||| ||| |   ||||| ||||||||||||||||||    
T  26575252 gcttgaaaacaaactcatggaaaataattcctaattttccttacgctctttactatactcgaacaatgggtgtttttgttgagaattct 26575164  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 29467516 - 29467654
Alignment:
Q  84 atgattcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttt 183  Q
    ||||||||||||| | ||||||||| || ||||| ||||| |||||| || || | ||| ||| ||||||||||  |||| |||||  ||||| ||||||    
T  29467516 atgattcacatgttacactcttcagctcgaaaacgaactcctggaaagtactttctagtatgccgtactctctttactatcctcaaaccatggtggtttt 29467615  T
Q  184 tgttgagaattctcttcactggataatgacaaagaaact 222  Q
    |||||||||||||||||| ||||||||||  ||||||||    
T  29467616 tgttgagaattctcttcattggataatgaagaagaaact 29467654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 29452967 - 29453169
Alignment:
Q  11 ggttttgatcctttaaccagcgattacaaactcctcagaatctcttggttagcctctccacacaactctttttatgattcacatgtcagactcttcagtt 110  Q
    ||||||||||| |||| |  |||||||||||||||||||||||||||  | |    ||||||  |||||  || |||||||||||| ||||||||||| |    
T  29452967 ggttttgatccgttaaacgtcgattacaaactcctcagaatctcttgtatcgttgatccacaatactctacttctgattcacatgtgagactcttcagct 29453066  T
Q  111 ctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataat 210  Q
    | ||||  ||||||||||||    |||| ||| ||| |||| |||||  |||| ||| |     ||||||||||||||||||||||||||||||||||||    
T  29453067 cgaaaatgaactcgtggaaagaccttcctagtatgccgtacgctctttcctatcctcgaacagagggggtttttgttgagaattctcttcactggataat 29453166  T
Q  211 gac 213  Q
    |||    
T  29453167 gac 29453169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 29423666 - 29423533
Alignment:
Q  89 tcacatgtcagactcttcagttctaaaacaaactcgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttg 188  Q
    |||||||  ||||||||||| || ||||||||||||||||||  | |||| |   |||  ||| |||||  ||||||||||   ||||||||||||||||    
T  29423666 tcacatgcgagactcttcagctcgaaaacaaactcgtggaaagaacttcctaccatgccttacactctttactatgctcaaacaatgggggtttttgttg 29423567  T
Q  189 agaattctcttcactggataatgacaaagaaact 222  Q
    |||||||||||||||||||||||||  |||||||    
T  29423566 agaattctcttcactggataatgacggagaaact 29423533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 29442978 - 29443027
Alignment:
Q  8 ttcggttttgatcctttaaccagcgattacaaactcctcagaatctcttg 57  Q
    |||||||||||||| || |||| ||||||||||||| |||||||||||||    
T  29442978 ttcggttttgatccattgaccaacgattacaaactcatcagaatctcttg 29443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 29443146 - 29443186
Alignment:
Q  173 atgggggtttttgttgagaattctcttcactggataatgac 213  Q
    ||||||| ||||||||||||||| ||||||||| |||||||    
T  29443146 atgggggattttgttgagaattcccttcactgggtaatgac 29443186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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