View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_67 (Length: 236)
Name: NF2097_low_67
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15606990 - 15606768
Alignment:
| Q |
1 |
ataacatactcatacaacacacaattcttaacagttttgcaaaaagttaaagtttttgcctattctacaaattaagatggtg-tggctactaatannnnn |
99 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
15606990 |
ataacatactcagacaacacacaattcttaacagttttgcaaaaagttaaagttcttgcctattctacaaattaagatggtggtggctactaatattttt |
15606891 |
T |
|
| Q |
100 |
nnggtggatactagatacgaagtatcttccaaca-ttgtgattcaccatgttatgagactggtactttctagtttctactagacctaacctcattggctt |
198 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15606890 |
ttggtggatactagatacgaagtatcttccaacaattgtgattcaccatgttatgagactggtactttctagtttctactagacctaacctcattggctt |
15606791 |
T |
|
| Q |
199 |
gaggtcgaaaacacactagcaca |
221 |
Q |
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|||||| |||||||||||||||| |
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| T |
15606790 |
gaggtcaaaaacacactagcaca |
15606768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15615345 - 15615123
Alignment:
| Q |
1 |
ataacatactcatacaacacacaattcttaacagttttgcaaaaagttaaagtttttgcctattctacaaattaagatggtg-tggctactaatannnnn |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
15615345 |
ataacatactcagacaacacacaattcttaacagttttgcaaaaagttaaagttcttgcctattctacaaattaagatggtggtggctactaatattttt |
15615246 |
T |
|
| Q |
100 |
nnggtggatactagatacgaagtatcttccaaca-ttgtgattcaccatgttatgagactggtactttctagtttctactagacctaacctcattggctt |
198 |
Q |
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| T |
15615245 |
ttggtggatactagatacgaagtatcttccaacaattgtgattcaccatgttatgagactggtactttctagtttctactagacctaacctcattggctt |
15615146 |
T |
|
| Q |
199 |
gaggtcgaaaacacactagcaca |
221 |
Q |
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|||||| |||||||||||||||| |
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| T |
15615145 |
gaggtcaaaaacacactagcaca |
15615123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 15638508 - 15638350
Alignment:
| Q |
1 |
ataacatactcatacaacacacaattcttaacagttttgcaaaaagttaaagtttttgcctattctacaaattaagatggt-gtggctactaatannnnn |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
15638508 |
ataacatactcatacaacacacaattcttaacagttttgcaaaaggttaaagttcttgcctattctacaaattaagatggtggtggctactaaatttttt |
15638409 |
T |
|
| Q |
100 |
nnggtggatactagatacgaagtatcttccaac-attgtgattcaccatgttatgagac |
157 |
Q |
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| T |
15638408 |
ttggtggatactagatacgaagtatcttccaacaattgtgattcaccatgttatgagac |
15638350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 15649671 - 15649513
Alignment:
| Q |
1 |
ataacatactcatacaacacacaattcttaacagttttgcaaaaagttaaagtttttgcctattctacaaattaagatggt-gtggctactaatannnnn |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
15649671 |
ataacatactcatacaacacacaattcttaacagttttggaaaaagttaaagttcttgcctattttacaaatttagatggtggtggctactaatattttt |
15649572 |
T |
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| Q |
100 |
nnggtggatactagatacgaagtatcttccaac-attgtgattcaccatgttatgagac |
157 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
15649571 |
ttggtggatactagatacgaagtatcttccaacaattgtgattcaccattttatgagac |
15649513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 15625911 - 15625753
Alignment:
| Q |
1 |
ataacatactcatacaacacacaattcttaacagttttgcaaaaagttaaagtttttgcctattctacaaattaagatggt-gtggctactaatannnnn |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
15625911 |
ataacatactcatacaacacacaattcttaacaattttgcaaaaagttaaagttcttgcctattttacaaatttagatggtggtggctactaatattttt |
15625812 |
T |
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| Q |
100 |
nnggtggatactagatacgaagtatcttccaac-attgtgattcaccatgttatgagac |
157 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
15625811 |
ttggttgatactagatacgaagtatcttccaacaattgtgattcaccattttatgagac |
15625753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 15625756 - 15625714
Alignment:
| Q |
179 |
agacctaacctcattggcttgaggtcgaaaacacactagcaca |
221 |
Q |
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| T |
15625756 |
agacctaacctcattggcttgaggtcgaaaacacactagcaca |
15625714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 15649516 - 15649474
Alignment:
| Q |
179 |
agacctaacctcattggcttgaggtcgaaaacacactagcaca |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15649516 |
agacctaacctcattggcttgaggtcgaaaacacactagcaca |
15649474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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